CATH Domain: 1k61C00 XML data for domain: 1k61C00

Molscript image for 1k61C00
1k61C00
PDB coordinates for domain 1k61C00

PDB 1k61, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.6
1.10.10.60.6.1
1.10.10.60.6.1.1
1.10.10.60.6.1.1.1
1.10.10.60.6.1.1.1.4

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Segment boundaries for domain 1k61C00

Chopping figure for domain 1k61C00
DomainStart PDB ResidueStop PDB Residue
1k61C00 134 189

Structural Neighbourhood (39 entries)

There are 39 matching structural neighberhood comparisons for CATH ID 1.10.10.60.6.1.1.1.4 (SIMAX score < 5)

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Displaying entries 1 to 39 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1le8B00 92.23 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 95 81 1.45 1.79
1b8iA00 91.66 Protein domain specific bindingDrosophila melanogasterPositive regulation of muscle organ developmentMesodermal cell fate specificationTranscription repressor activity 1.10.10.60 62 30 91 2.95 3.21
1b8iB00 91.39 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 27 96 1.30 1.34
2hddB00 90.96 Trunk segmentationImaginal disc-derived female genitalia developmentDrosophila melanogasterImaginal disc-derived male genitalia developmentProtein binding 1.10.10.60 56 30 90 1.69 1.88
1jggA00 90.94 Trunk segmentationMotor axon guidanceMuscle organ developmentHomeobox even-skipped homolog proteinSegmentation protein even-skipped 1.10.10.60 57 29 93 1.75 1.88
2dmqA01 90.89 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 28 88 1.54 1.74
1mnmC00 90.86 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 96 75 1.56 2.07
1o4xA02 90.62 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 24 88 1.37 1.55
1au7A02 89.99 Positive regulation of transcription from RNA polymerase II promoterRattus norvegicusNucleusNegative regulation of transcription from RNA polymerase II promoterAdenohypophysis development 1.10.10.60 57 19 93 1.76 1.89
1b72A00 89.64 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 28 83 1.41 1.68
1pufB00 89.07 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 28 82 1.63 1.98
1mh3A03 88.88 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 21 85 1.72 2.02
1nk3P00 88.62 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 31 90 1.79 1.98
1e3oC02 86.83 POU domain transcription factor, class 2POU domain, class 2, transcription factor 1Protein bindingSequence-specific DNA binding transcription factor activityNegative regulation of transcription, DNA-dependent 1.10.10.60 48 16 80 1.99 2.49
1wjhA00 85.75 1.10.10.60 76 28 75 2.69 3.59
1w0tA00 83.47 Protein homooligomerizationPositive regulation of mitotic cell cycleTelomere maintenance via telomere shorteningNegative regulation of telomerase activityG2/M transition of mitotic cell cycle 1.10.10.60 52 15 86 2.96 3.42
1ic8A02 83.46 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 16 71 1.62 2.26
1tc3C00 82.52 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 17 83 4.13 4.96
1iv6A00 81.84 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 14 88 2.84 3.22
1fexA00 81.21 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 15 86 3.23 3.73
1irzA00 81.12 Regulation of anthocyanin metabolic processCytokinin mediated signaling pathwayNucleusSequence-specific DNA binding transcription factor activityArabidopsis thaliana 1.10.10.60 64 15 89 4.20 4.72
1bobA03 81.07 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 14 90 2.90 3.22
1wh5A00 80.87 Arabidopsis thalianaZF-HD homeobox protein At5g65410 1.10.10.60 80 15 72 3.41 4.70
1rr7A02 80.87 Middle operon regulatorEnterobacteria phage Mu 1.10.10.60 48 10 76 3.23 4.21
1gdtB03 80.12 Transposon gamma-delta resolvaseEscherichia coli K-12 1.10.10.60 45 8 70 2.43 3.47
1gv2A02 79.62 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 19 76 2.85 3.72
3dewA01 79.42 TetR/AcrR family transcriptional regulatorTranscriptional regulator, TetR familyGeobacter sulfurreducens 1.10.10.60 50 10 73 3.03 4.13
3c2bA01 79.32 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.10.60 51 5 76 3.78 4.93
2np3B01 78.97 Streptomyces coelicolorPutative TetR-family regulator 1.10.10.60 60 6 80 3.50 4.38
3bqzA01 78.68 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 10 81 3.88 4.75
1t33A01 78.28 Putative transcriptional repressor (TetR/AcrR family)Salmonella enterica subsp. enterica serovar Typhimurium 1.10.10.60 62 3 75 3.54 4.67
1lfbA00 77.64 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 15 72 3.00 4.12
3f0cA01 77.56 Cytophaga hutchinsonii ATCC 33406Transcriptional regulator 1.10.10.60 47 8 68 3.22 4.71
2id3A01 77.50 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 47 6 76 3.59 4.68
2f48A03 77.12 Fructose and mannose metabolismPyrophosphate--fructose-6-phosphate 1-phosphotransferase [EC:2.7.1.90]Borrelia burgdorferiPyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit (PfpB) 1.10.10.480 75 13 73 3.46 4.72
2k9nA02 76.97 MYB24Trichomonas vaginalis 1.10.10.60 54 11 78 3.83 4.89
2hyjA01 76.03 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 8 70 3.46 4.94
1mw7A01 75.93 Helicobacter pyloriUPF0082 protein HP_0162 1.10.10.200 58 5 85 4.21 4.95
1hlvA02 72.76 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 60 10 83 4.05 4.86
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Displaying entries 1 to 39 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1k61C00
HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1k61C00
RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTIT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"