CATH Domain: 1k5cA00 XML data for domain: 1k5cA00

Molscript image for 1k5cA00
1k5cA00
PDB coordinates for domain 1k5cA00

PDB 1k5c, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.160 3 Solenoid
2.160.20 Pectate Lyase C-like
2.160.20.10 Single-stranded right-handed beta-helix, Pectin lyase-like Gene3D
2.160.20.10.1
2.160.20.10.1.1
2.160.20.10.1.1.1
2.160.20.10.1.1.1.1
2.160.20.10.1.1.1.1.1

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Segment boundaries for domain 1k5cA00

Chopping figure for domain 1k5cA00
DomainStart PDB ResidueStop PDB Residue
1k5cA00 3 335

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 2.160.20.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hg8A00 87.24 Gibberella fujikuroiPolygalacturonase 2.160.20.10 349 36 92 1.83 1.97
1bheA00 80.60 Endo-polygalacturonasePectobacterium carotovorum subsp. carotovorum 2.160.20.10 376 19 80 2.99 3.72
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1k5cA00
CTVKSVDDAKDIAGCSAVTLNGFTVPAGNTLVLNPDKGATVTMAGDITFAKTTLDGPLFTIDGTGINFVGADHIFDGNGA
LYWDGKGTNNGTHKPHPFLKIKGSGTYKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVSANNV
TIQNCIVKNQDDCIAINDGNNIRFENNQCSGGHGISIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVT
YDANTISGIAKYGVLISQSYPDDVGNPGTGAPFSDVNFTGGATTIKVNNAATRVTVECGNCSGNWNWSQLTVTGGKAGTI
KSDKAKITGGQYL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1k5cA00
ATCTVKSVDDAKDIAGCSAVTLNGFTVPAGNTLVLNPDKGATVTMAGDITFAKTTLDGPLFTIDGTGINFVGADHIFDGN
GALYWDGKGTNNGTHKPHPFLKIKGSGTYKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVSAN
NVTIQNCIVKNQDDCIAINDGNNIRFENNQCSGGHGISIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSG
VTYDANTISGIAKYGVLISQSYPDDVGNPGTGAPFSDVNFTGGATTIKVNNAATRVTVECGNCSGNWNWSQLTVTGGKAG
TIKSDKAKITGGQYL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"