CATH Domain: 1k4tA04 XML data for domain: 1k4tA04

Molscript image for 1k4tA04
1k4tA04
PDB coordinates for domain 1k4tA04

PDB 1k4t, Chain A, Domain 4

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.132 Topoisomerase I; Chain A, domain 4
1.10.132.10 Gene3D
1.10.132.10.1
1.10.132.10.1.1
1.10.132.10.1.1.1
1.10.132.10.1.1.1.1
1.10.132.10.1.1.1.1.1

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Segment boundaries for domain 1k4tA04

Chopping figure for domain 1k4tA04
DomainStart PDB ResidueStop PDB Residue
1k4tA01 201 231
1k4tA01 320 431
1k4tA02 232 319
1k4tA03 432 586
1k4tA04 587 765

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 1.10.132.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rr8C04 87.87 NucleolusProtein bindingChromatin bindingDNA topoisomerase 1DNA topoisomerase I [EC:5.99.1.2] 1.10.132.10 108 98 60 0.53 0.88
1a35A04 85.15 NucleolusProtein bindingChromatin bindingDNA topoisomerase 1DNA topoisomerase I [EC:5.99.1.2] 1.10.132.10 97 98 53 0.66 1.22
1lrzA03 73.00 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 1.20.58.90 62 14 34 1.41 4.05
1nkdA00 71.80 Regulatory protein ropEscherichia coli 1.10.287.230 59 6 33 1.65 4.98
1ku9A02 71.21 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.287.450 63 11 33 1.45 4.30
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1k4tA04
KVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLK
SAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNLDPRITVAWCKKWGVPIEKIYNKT
QREKFAWAIDMADEDYEF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1k4tA04
KVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLK
SAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAWCKKWGVPIEKIYNK
TQREKFAWAIDMADEDYEF
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 18 Aug 2007 10:17

Assigning to "1.10.132.10" based on similarity with "1r49A04"

Flow stage update by auto on 18 Aug 2007 10:09

No in_process hits for Domain "1k4tA04" ready to be processed

Flow stage update by auto on 18 Aug 2007 10:09

NW result present for Domain "1k4tA04"

Flow stage update by auto on 16 Aug 2007 17:15

All required files are present for Domain "1k4tA04"

Flow stage update by auto on 16 Aug 2007 00:02

Beginning processing for Domain "1k4tA04"

Insertion by cuff on 15 Aug 2007 11:38

nice chopping