CATH Domain: 1k47A02 XML data for domain: 1k47A02

Molscript image for 1k47A02
1k47A02
PDB coordinates for domain 1k47A02

PDB 1k47, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.890 Gene3D
3.30.70.890.3
3.30.70.890.3.1
3.30.70.890.3.1.1
3.30.70.890.3.1.1.2
3.30.70.890.3.1.1.2.1

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Segment boundaries for domain 1k47A02

Chopping figure for domain 1k47A02
DomainStart PDB ResidueStop PDB Residue
1k47A01 2 195
1k47A02 196 329

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.30.70.890.3.1.1.2.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kvkA02 87.14 PeroxisomeTerpenoid backbone biosynthesisRattus norvegicusIsopentenyl diphosphate biosynthetic process, mevalonate pathwaySoluble fraction 3.30.70.890 148 19 88 2.20 2.49
1kkhA02 87.00 Terpenoid backbone biosynthesisMethanocaldococcus jannaschiiMevalonate kinaseMevalonate kinase [EC:2.7.1.36]Metabolic pathways 3.30.70.890 131 19 92 1.91 2.06
1pieA02 80.77 Amino sugar and nucleotide sugar metabolismGalactose metabolismMetabolic pathwaysLactococcus lactis subsp. lactisGalactokinase [EC:2.7.1.6] 3.30.70.890 177 14 72 2.36 3.26
1fi4A02 74.94 Terpenoid backbone biosynthesisIdentical protein bindingDiphosphomevalonate decarboxylaseSterol biosynthetic processDiphosphomevalonate decarboxylase activity 3.30.70.890 192 5 66 3.20 4.84
1jm0A00 70.86 1.20.5.420 48 8 30 1.06 3.46
2e5yA02 68.48 ATP synthase epsilon chainBacillus sp. PS3 1.20.5.440 45 4 25 0.70 2.76
2jdiH02 64.24 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 1.20.5.440 42 9 23 0.77 3.33
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1k47A02
PTLECDFLVGWTKEVAVSSHVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQ
LKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1k47A02
PTLECDFLVGWTKEVAVSSHXVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLR
QLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERIGHDDKS
BLAST against CATH

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Domain History Events (7)

Domain assigned by lewis on 19 Jan 2007 16:21

Assigning domain 1k47A02 to 3.30.70.890 (as agreed with the CATH update team) after the chain has been rechopped. The reason is that the domain is very similar to an old domain (from the previous chopping) which was in 3.30.70.890 at the time the chain was unchopped.

Flow stage update by auto on 22 Dec 2006 03:43

No satisfactory AssignClose result found.

Flow stage update by auto on 22 Dec 2006 03:40

No in_process hits for Domain "1k47A02" ready to be processed

Flow stage update by auto on 22 Dec 2006 03:40

NW result present for Domain "1k47A02"

Flow stage update by auto on 21 Dec 2006 15:34

All required files are present for Domain "1k47A02"

Flow stage update by auto on 21 Dec 2006 15:34

Beginning processing for Domain "1k47A02"

Insertion by cuff on 21 Dec 2006 11:34

good batch of choppings