CATH Domain: 1k3iA03 XML data for domain: 1k3iA03

Molscript image for 1k3iA03
1k3iA03
PDB coordinates for domain 1k3iA03

PDB 1k3i, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.10 Immunoglobulins Gene3D
2.60.40.10.19
2.60.40.10.19.1
2.60.40.10.19.1.1
2.60.40.10.19.1.1.1
2.60.40.10.19.1.1.1.1

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Segment boundaries for domain 1k3iA03

Chopping figure for domain 1k3iA03
DomainStart PDB ResidueStop PDB Residue
1k3iA01 -1 153
1k3iA02 154 541
1k3iA03 542 638

Structural Neighbourhood (98 entries)

There are 98 matching structural neighberhood comparisons for CATH ID 2.60.40.10.19.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 98 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bmvA03 84.63 Thermoanaerobacterium thermosulfurigenesCyclomaltodextrin glucanotransferase precursor 2.60.40.10 80 20 78 2.13 2.72
1p7hL02 83.41 2.60.40.10 107 16 86 3.25 3.74
1my5A00 82.94 NucleusDNA bindingTranscription factor activityAcute myeloid leukemiaProtein binding 2.60.40.10 107 12 81 2.89 3.55
1imhC02 82.69 NucleusNuclear factor of activated T-cells 5ExcretionTranscription factor activityRNA polymerase II transcription factor activity 2.60.40.10 106 17 86 4.06 4.68
1uadC00 81.96 ExocystRattus norvegicusExocyst complex component 2 2.60.40.10 92 10 81 2.64 3.24
2uzyB03 81.60 Hepatocyte growth factor receptor activityBasal plasma membraneIntegral to plasma membraneHepatocyte growth factor receptor precursorHomo sapiens 2.60.40.10 87 18 74 1.65 2.22
1iarB01 81.19 Immune responseJak-STAT signaling pathwayInterleukin 4 receptorEukaryotic plasma membrane / membrane attachedIntegral to plasma membrane 2.60.40.10 96 9 88 3.32 3.74
1eerC01 80.98 Blood cellJak-STAT signaling pathwayEukaryotic plasma membrane / membrane attachedIntegral to plasma membraneHematopoietic cell lineage 2.60.40.10 97 10 84 3.48 4.12
2brqA00 80.95 Nervous system developmentTranscription factor bindingActin filament bindingCytoplasmPositive regulation of transcription factor import into nucleus 2.60.40.10 94 7 79 3.37 4.25
1p53A01 80.93 Integral to plasma membraneLeukocyte transendothelial migrationNatural killer cell mediated cytotoxicityHomo sapiensIntercellular adhesion molecule 1 2.60.40.10 98 14 79 2.95 3.71
3brdA03 80.65 2.60.40.10 98 12 82 3.42 4.14
1v05A00 80.54 Filamin-CHomo sapiensProtein binding 2.60.40.10 96 9 81 3.49 4.29
2nziA03 80.34 TitinHomo sapiens 2.60.40.10 94 9 81 2.89 3.55
2uzyB04 80.32 Basal plasma membraneHepatocyte growth factor receptor activityIntegral to plasma membraneHepatocyte growth factor receptor precursorHomo sapiens 2.60.40.10 79 12 76 2.16 2.83
1pd6A00 80.31 Myosin-binding protein C, cardiac-typeVentricular cardiac muscle morphogenesisHeart morphogenesisHomo sapiensProtein binding 2.60.40.10 94 9 81 3.42 4.20
2nqcA00 80.26 Filamin-CHomo sapiensProtein binding 2.60.40.10 97 7 80 3.34 4.15
1ix2A00 80.25 Copper resistance protein C precursorEscherichia coli 2.60.40.1220 97 10 89 4.14 4.62
1uctA01 80.14 Immune responseEukaryotic plasma membrane / membrane attachedIntegral to plasma membranePlasma membraneLeucocyte 2.60.40.10 91 9 81 3.32 4.08
1cwvA02 79.99 InvasinYersinia pseudotuberculosis 2.60.40.920 97 10 81 2.88 3.54
1f6fB01 79.70 Rattus norvegicusProlactin receptor precursor 2.60.40.10 97 12 84 3.92 4.64
1jmxA03 79.69 Quinohemoprotein amine dehydrogenase 60 kDa subunitPseudomonas putida 2.60.40.10 79 12 79 2.74 3.45
1cfbA01 79.54 Calcium ion bindingRegulation of tube size, open tracheal systemNeuroglian precursorAxon extensionAxonogenesis 2.60.40.10 99 14 80 3.54 4.38
1l6zA02 79.31 Mus musculusCarcinoembryonic antigen-related cell adhesion molecule 1 precursor 2.60.40.10 96 9 79 3.57 4.50
2fcbA01 79.30 Homo sapiensLow affinity immunoglobulin gamma Fc region receptor II-b precursorImmune responseSignal transductionProtein binding 2.60.40.10 86 8 77 3.79 4.90
2gy5A04 79.18 VesselsReceptor activityEukaryotic plasma membrane / membrane attachedIntegral to plasma membraneTransmembrane receptor protein tyrosine kinase signaling pathway 2.60.40.10 99 11 86 3.62 4.17
1cwvA03 79.04 InvasinYersinia pseudotuberculosis 2.60.40.920 102 6 76 2.95 3.86
1l0qA02 79.03 Methanosarcina mazeiORF492 2.60.40.670 90 7 74 3.02 4.07
1cd9B02 78.99 Cell adhesionIntegral to membraneProtein bindingExtracellular spaceChemotaxis 2.60.40.10 98 7 82 3.69 4.46
1qr4A01 78.93 Tenascin precursorGallus gallus 2.60.40.10 87 4 80 3.20 3.98
1fnhA03 78.88 Fibronectin precursorER-Golgi intermediate compartmentHomo sapiens 2.60.40.10 89 7 80 3.09 3.84
1f2qA02 78.85 Eukaryotic plasma membrane / membrane attachedIntegral to plasma membranePlasma membraneAssembly of protein complexesProtein binding 2.60.40.10 90 8 78 3.82 4.88
2fnbA00 78.74 Canis lupus familiarisFibronectin ED-B 2.60.40.10 95 6 82 3.10 3.76
1qg3A01 78.70 Integrin beta-4 precursorHomo sapiensIntegrin complexProtein binding 2.60.40.10 91 10 81 3.87 4.75
1fnfA01 78.67 Fibronectin precursorER-Golgi intermediate compartmentHomo sapiens 2.60.40.10 94 11 85 3.59 4.20
2ec8A04 78.64 Protein bindingProto-oncogene tyrosine-protein kinase KitEukaryotic plasma membrane / membrane attachedHematopoietic cell lineageCELL FATE 2.60.40.10 100 13 83 3.66 4.41
1svbA04 78.49 Genome polyproteinTick-borne encephalitis virus (WESTERN SUBTYPE) 2.60.40.350 96 11 77 3.73 4.82
1fnhA01 78.43 Fibronectin precursorER-Golgi intermediate compartmentHomo sapiens 2.60.40.10 90 5 81 3.34 4.10
1ugnA01 78.42 Homo sapiensLeukocyte immunoglobulin-like receptor subfamily B member 1 precursorResponse to virusIntegral to membraneProtein phosphatase 1 binding 2.60.40.10 95 8 82 3.80 4.61
1axiB02 78.39 Jak-STAT signaling pathwayEukaryotic plasma membrane / membrane attachedOsteogenesisIntegral to plasma membraneSkeletal development 2.60.40.10 101 7 79 3.78 4.77
1nkrA01 78.36 2.60.40.10 97 11 85 3.78 4.42
2qfpA01 78.30 Iron(III)-zinc(II) purple acid phosphatasePhaseolus vulgaris 2.60.40.380 97 6 82 3.51 4.26
1iarB02 78.30 Immune responseJak-STAT signaling pathwayInterleukin 4 receptorEukaryotic plasma membrane / membrane attachedIntegral to plasma membrane 2.60.40.10 92 5 74 2.93 3.95
2j8hA02 78.24 TitinHomo sapiens 2.60.40.10 98 13 83 3.91 4.67
1eerB02 78.20 Blood cellJak-STAT signaling pathwayEukaryotic plasma membrane / membrane attachedIntegral to plasma membraneHematopoietic cell lineage 2.60.40.10 102 5 79 3.34 4.21
2uzxB02 78.02 Hepatocyte growth factor receptor activityBasal plasma membraneIntegral to plasma membraneHepatocyte growth factor receptor precursorHomo sapiens 2.60.40.10 121 16 61 1.86 3.00
2hftA02 78.00 Eukaryotic plasma membrane / membrane attachedTissue factor precursorRegulation by binding / dissociationIntegral to membraneProtein binding 2.60.40.10 102 10 70 2.91 4.12
3cmgA04 77.99 2.60.40.1560 87 5 77 3.43 4.44
1y6kR02 77.99 2.60.40.10 103 10 75 3.13 4.13
1nkrA02 77.98 2.60.40.10 98 12 78 3.75 4.77
1cvrA03 77.95 Gingipain RPorphyromonas gingivalisGingipain R2 precursor 2.60.40.10 83 10 82 3.59 4.35
2e7hA01 77.82 Cell surfaceOrgan morphogenesisIntegral to plasma membraneCell proliferationEph receptor B4 2.60.40.10 89 7 78 3.88 4.95
1k85A00 77.80 Chitinase A1 precursorBacillus circulans 2.60.40.10 88 14 74 3.18 4.28
1bquA01 77.70 Integral to plasma membraneReceptor activityPlasma membraneInterleukin-6 receptor activityProtein binding 2.60.40.10 100 8 78 3.51 4.50
2gysA02 77.69 Jak-STAT signaling pathwayEukaryotic plasma membrane / membrane attachedReceptor activityGranulocyte macrophage colony-stimulating factor receptor complexInterleukin-5 receptor activity 2.60.40.10 102 8 75 3.20 4.24
1iamA01 77.62 Integral to plasma membraneNatural killer cell mediated cytotoxicityLeukocyte transendothelial migrationHomo sapiensIntercellular adhesion molecule 1 2.60.40.10 83 9 71 3.37 4.74
1fnaA00 77.62 Fibronectin precursorER-Golgi intermediate compartmentHomo sapiens 2.60.40.10 91 8 79 3.78 4.76
1n26A03 77.60 Immune responseJak-STAT signaling pathwayEukaryotic plasma membrane / membrane attachedExtracellular regionInterleukin-6 receptor activity 2.60.40.10 104 2 76 3.48 4.52
1clcA01 77.56 Clostridium thermocellumEndoglucanase D precursor 2.60.40.10 102 10 78 3.17 4.04
1qfhA01 77.44 PhototaxisHyperosmotic responseActin filament bindingProtein bindingCytoplasm 2.60.40.10 111 9 74 3.14 4.20
1bquA02 77.41 Receptor activityIntegral to plasma membranePlasma membraneInterleukin-6 receptor activityProtein binding 2.60.40.10 108 5 75 3.29 4.39
1owwA00 77.37 Fibronectin precursorER-Golgi intermediate compartmentHomo sapiens 2.60.40.10 93 11 83 3.83 4.59
1uacH00 77.20 2.60.40.10 114 9 72 3.26 4.48
2gysB04 77.17 Jak-STAT signaling pathwayEukaryotic plasma membrane / membrane attachedReceptor activityGranulocyte macrophage colony-stimulating factor receptor complexInterleukin-5 receptor activity 2.60.40.10 99 8 76 3.73 4.86
2rb8A00 77.14 Tenascin precursorCytoskeleton/structural proteinsExtracellular matrix componentCell migrationCell adhesion 2.60.40.10 93 9 84 3.92 4.64
1nepA00 77.07 Bos taurusEpididymal secretory protein E1 precursor 2.60.40.770 130 10 64 2.79 4.32
1g0dA01 77.07 Protein-glutamine gamma-glutamyltransferase 2Pagrus major 2.60.40.10 137 12 63 2.32 3.65
1lwrA00 76.91 Rattus norvegicusNeural cell adhesion moleculeNeural cell adhesion molecule 1, 140 kDa isoform precursorCell adhesion molecules (CAMs) 2.60.40.10 96 7 81 3.62 4.44
1fyhB02 76.83 Jak-STAT signaling pathwayInterferon-gamma receptor alpha chain precursorEukaryotic plasma membrane / membrane attachedIntegral to plasma membraneInterferon-gamma receptor activity 2.60.40.10 103 9 74 3.29 4.40
1i1rA01 76.79 Integral to plasma membraneReceptor activityPlasma membraneInterleukin-6 receptor activityProtein binding 2.60.40.10 100 8 78 3.70 4.74
1nctA00 76.77 TitinHomo sapiens 2.60.40.10 98 14 84 3.69 4.36
1t2jA00 76.74 Homo sapiensSingle chain Fv 2.60.40.10 116 13 71 3.37 4.71
1tvdA00 76.72 Homo sapiensHDV103S1 2.60.40.10 116 7 70 3.50 4.95
1witA00 76.65 Caenorhabditis elegansLocomotionPutative uncharacterized protein unc-22 2.60.40.10 93 17 84 3.97 4.70
1t0pB00 76.55 Integral to plasma membraneEukaryotic plasma membrane / membrane attachedIntercellular adhesion molecule 3 precursorLeucocyteCell adhesion 2.60.40.10 86 9 71 3.50 4.92
2ialA01 76.54 Homo sapiensProtein bindingT-cell receptor alpha chain C region 2.60.40.10 108 8 75 3.67 4.83
1axiB01 76.43 Jak-STAT signaling pathwaySkeletal developmentEukaryotic plasma membrane / membrane attachedOsteogenesisProtein binding 2.60.40.10 86 11 80 3.79 4.71
1waaC00 76.32 TitinHomo sapiens 2.60.40.10 93 7 80 3.59 4.46
2gysA03 76.29 Jak-STAT signaling pathwayEukaryotic plasma membrane / membrane attachedReceptor activityGranulocyte macrophage colony-stimulating factor receptor complexInterleukin-5 receptor activity 2.60.40.10 86 8 77 3.80 4.91
2cumA00 76.25 Collagen metabolic processCell motilityTenascin-X precursorFibrillar collagenElastic fiber assembly 2.60.40.10 105 10 78 3.75 4.80
1op3H01 76.23 2.60.40.10 123 7 67 3.31 4.91
3b9eA01 76.18 Chitinase A precursorVibrio harveyi 2.60.40.10 110 6 73 3.12 4.24
2rikA01 76.14 TitinOryctolagus cuniculus 2.60.40.10 96 12 81 3.63 4.46
1dr9A02 75.95 Eukaryotic plasma membrane / membrane attachedType I diabetes mellitusLeucocyteT-lymphocyte activation antigen CD80 precursorCD80 antigen 2.60.40.10 95 7 80 3.52 4.38
1q0xL02 75.84 2.60.40.10 100 7 81 3.76 4.64
1ehxA00 75.47 Clostridium cellulolyticumScaffolding protein precursor 2.60.40.10 94 12 79 3.93 4.95
1bhgA02 75.42 Carbohydrate metabolic processBeta-glucuronidase activityHomo sapiensBeta-glucuronidase precursorGlycosaminoglycan catabolic process 2.60.40.320 104 9 74 3.05 4.12
2ec8A05 75.38 Protein bindingProto-oncogene tyrosine-protein kinase KitEukaryotic plasma membrane / membrane attachedHematopoietic cell lineageCELL FATE 2.60.40.10 81 8 76 3.43 4.50
3b43A02 75.36 TitinHomo sapiens 2.60.40.10 97 9 82 3.95 4.79
1hxmA01 75.25 Homo sapiensTRGV9 protein 2.60.40.10 121 7 69 3.42 4.93
1jz7A02 75.23 Galactose metabolismGlycan structures - degradationGlycosaminoglycan degradationSphingolipid metabolismN-Glycan degradation 2.60.40.320 114 4 78 3.90 5.00
1eh9A03 75.06 Alpha-amylaseSulfolobus solfataricus 2.60.40.10 87 5 68 2.90 4.26
2ec8A02 75.00 Protein bindingProto-oncogene tyrosine-protein kinase KitEukaryotic plasma membrane / membrane attachedCELL FATEHematopoietic cell lineage 2.60.40.10 87 5 80 3.45 4.29
2hftA01 74.96 Eukaryotic plasma membrane / membrane attachedTissue factor precursorRegulation by binding / dissociationIntegral to membraneProtein binding 2.60.40.10 103 1 78 3.83 4.87
1im3D00 74.82 Unique short US2 glycoproteinHuman herpesvirus 5 strain AD169 2.60.40.1200 95 9 85 3.62 4.23
3bgaA04 74.79 Galactose metabolismGlycan structures - degradationGlycosaminoglycan degradationSphingolipid metabolismBacteroides thetaiotaomicron 2.60.40.320 105 7 77 3.78 4.90
2g5rA00 74.78 Sialic acid binding Ig-like lectin 7Integral to plasma membraneEukaryotic plasma membrane / membrane attachedReceptor activityTransmembrane receptor protein tyrosine kinase signalling pathways 2.60.40.10 113 10 74 3.64 4.90
2c5dC01 74.71 Integral to plasma membraneTransmembrane receptor protein tyrosine kinase activityHomo sapiensSignal transductionTyrosine-protein kinase receptor UFO precursor 2.60.40.10 104 10 79 3.28 4.11
1mfaH01 74.68 2.60.40.10 97 6 70 3.22 4.59
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Displaying entries 1 to 98 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1k3iA03
TRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQRRIPLTLTNNGGNSYSFQVPSDSGVALPGYWMLF
VMNSAGVPSVASTIRVT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1k3iA03
TRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQRRIPLTLTNNGGNSYSFQVPSDSGVALPGYWMLF
VMNSAGVPSVASTIRVT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:38

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:38

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:01

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"