CATH Domain: 1k3iA01 XML data for domain: 1k3iA01

Molscript image for 1k3iA01
1k3iA01
PDB coordinates for domain 1k3iA01

PDB 1k3i, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.260 Galactose-binding domain-like Gene3D
2.60.120.260.12
2.60.120.260.12.1
2.60.120.260.12.1.1
2.60.120.260.12.1.1.1
2.60.120.260.12.1.1.1.1

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Segment boundaries for domain 1k3iA01

Chopping figure for domain 1k3iA01
DomainStart PDB ResidueStop PDB Residue
1k3iA01 -1 153
1k3iA02 154 541
1k3iA03 542 638

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 2.60.120.260.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1w8oA03 91.37 Micromonospora viridifaciensSialidase 2.60.120.260 145 31 91 1.47 1.61
1jhjA00 85.64 Progesterone-mediated oocyte maturationUbiquitin mediated proteolysisOocyte meiosisCell cycleMitotic anaphase 2.60.120.260 161 11 88 2.73 3.07
1tvgA00 85.30 Heat shock protein beta-11Homo sapiens 2.60.120.260 136 13 83 2.45 2.95
1k12A00 84.73 FucolectinCalcium ion bindingFucose bindingRegulation of complement activation, lectin pathwayAnguilla anguilla 2.60.120.260 158 16 87 3.24 3.71
3bn6A00 84.25 LactadherinBos taurus 2.60.120.260 158 14 85 2.57 3.01
2qqiA01 83.87 Cell-cell signalingAxon guidanceOrgan morphogenesisPositive regulation of cell proliferationHomo sapiens 2.60.120.260 153 11 90 3.15 3.46
2wuhA00 82.81 Discoidin domain receptor family, member 2 [EC:2.7.10.1]Discoidin domain-containing receptor 2Integral to plasma membraneCell adhesionTransmembrane receptor protein tyrosine kinase activity 2.60.120.260 163 12 87 3.54 4.06
1o59A02 81.72 Allantoicase [EC:3.5.3.4]Purine metabolismSaccharomyces cerevisiaeAllantoicaseAllantoin catabolic process 2.60.120.260 138 9 84 3.11 3.68
1gqpB00 81.42 Mitotic sister chromatid segregationCyclin catabolic processMeiosis - yeastUbiquitin mediated proteolysisProtein binding 2.60.120.260 188 13 75 3.25 4.30
2qqiA02 81.25 Cell-cell signalingAxon guidanceOrgan morphogenesisPositive regulation of cell proliferationHomo sapiens 2.60.120.260 154 7 90 3.65 4.01
3k77A00 81.23 DNA repair protein XRCC1Homo sapiensProtein binding 2.60.120.260 152 7 85 2.75 3.23
1o59A01 79.92 Allantoicase [EC:3.5.3.4]Purine metabolismSaccharomyces cerevisiaeAllantoicaseAllantoin catabolic process 2.60.120.260 174 10 79 3.25 4.10
1gnyA00 75.05 Cellvibrio japonicusEndo-beta-1,4-xylanase 2.60.120.260 153 5 83 4.13 4.97
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1k3iA01
RASAPIGSAISRNNWAVTCDSAQSGNECNKAIDGNKDTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQN
GWIGRHEVYLSSDGTNWGSPVASGSWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1k3iA01
RASAPIGSAISRNNWAVTCDSAQSGNECNKAIDGNKDTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQN
GWIGRHEVYLSSDGTNWGSPVASGSWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:01

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"