CATH Domain: 1jy1A01 XML data for domain: 1jy1A01

Molscript image for 1jy1A01
1jy1A01
PDB coordinates for domain 1jy1A01

PDB 1jy1, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.870 Endonuclease; Chain A
3.30.870.10 Endonuclease Chain A Gene3D
3.30.870.10.2
3.30.870.10.2.1
3.30.870.10.2.1.1
3.30.870.10.2.1.1.1
3.30.870.10.2.1.1.1.1

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Segment boundaries for domain 1jy1A01

Chopping figure for domain 1jy1A01
DomainStart PDB ResidueStop PDB Residue
1jy1A01 149 351
1jy1A02 352 608

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.870.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1q32A01 85.63 5'-tyrosyl-DNA phosphodiesterase activityNucleusTyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]Saccharomyces cerevisiaeTyrosyl-DNA phosphodiesterase 1 3.30.870.10 182 18 84 2.78 3.31
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jy1A01
GEGQDIWDLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHG
DKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHK
SGESPTHFKANLISYLTAYNAPSLKEWIDVIHKHDLSETN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jy1A01
GEGQDIWDXLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVH
GDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKXXLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADG
THKSGESPTHFKANLISYLTAYNAPSLKEWIDVIHKHDLSETN
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 16:59

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"