CATH Domain: 1jx4A03 XML data for domain: 1jx4A03

Molscript image for 1jx4A03
1jx4A03
PDB coordinates for domain 1jx4A03

PDB 1jx4, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.20 5' to 3' exonuclease, C-terminal subdomain Gene3D
1.10.150.20.5
1.10.150.20.5.1
1.10.150.20.5.1.1
1.10.150.20.5.1.1.1
1.10.150.20.5.1.1.1.1

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Segment boundaries for domain 1jx4A03

Chopping figure for domain 1jx4A03
DomainStart PDB ResidueStop PDB Residue
1jx4A01 11 77
1jx4A02 2 10
1jx4A02 78 166
1jx4A03 167 233
1jx4A04 244 341

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 1.10.150.20.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2i1qA01 85.01 DNA repair and recombination protein radAMethanococcus voltae 1.10.150.20 62 29 80 2.72 3.39
1wcnA01 83.89 N utilization substance protein ATranscription elongation protein nusAEscherichia coli K-12 1.10.150.20 60 28 84 2.87 3.38
2z43B01 82.57 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 64 17 69 2.56 3.67
1szpA01 82.57 DNA repair protein RAD51Identical protein bindingDouble-strand break repair via homologous recombinationHeteroduplex formationDNA-dependent ATPase activity 1.10.150.20 72 21 80 3.05 3.79
1x9xA00 80.99 MAPK signaling pathway - yeastSAM domain bindingIdentical protein bindingInvasive growth in response to glucose limitationActivation of MAPKK activity 1.10.150.50 62 3 84 3.33 3.92
2dflA01 80.90 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 26 81 2.90 3.54
3kkaD00 79.80 Integral to plasma membraneEphrin type-A receptor 2Protein bindingSignal transductionEph receptor A2 [EC:2.7.10.1] 1.10.150.50 68 12 86 3.07 3.54
3h8mA00 77.96 EphA7 [EC:2.7.10.1]Homo sapiensEphrin type-A receptor 7Axon guidance 1.10.150.50 71 4 85 3.58 4.17
1x66A01 77.67 Sequence-specific DNA binding transcription factor activityHemostasisOrgan morphogenesisHomo sapiensFriend leukemia integration 1 transcription factor 1.10.150.50 70 3 81 3.64 4.47
1pk3A00 77.41 PRC1 complexIdentical protein bindingNegative regulation of transcriptionPolycomb protein ScmAxonogenesis 1.10.150.50 76 10 82 4.03 4.86
1dxsA00 77.32 DNA damage response, signal transduction resulting in induction of apoptosisTranscription factor bindingProtein bindingPositive regulation of transcription, DNA-dependentMismatch repair 1.10.150.50 57 8 74 2.54 3.42
1lb2B00 76.50 Pyrimidine metabolismPurine metabolismRNA polymeraseMetabolic pathwaysDNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 1.10.150.20 72 10 76 3.68 4.82
1y88A02 76.07 Archaeoglobus fulgidusUncharacterized protein AF_1548 1.10.150.20 59 5 68 3.00 4.40
1z1vA00 75.81 Protein kinase regulator activitySAM domain bindingProtein STE50Signal transduction involved in filamentous growthPheromone-dependent signal transduction involved in conjugation with cellular fusion 1.10.150.50 70 7 81 3.26 4.00
3bqtA00 75.46 Listeria monocytogenes serotype 4b str. F2365DNA transformation protein and related proteinsPutative uncharacterized protein 1.10.150.20 81 13 66 3.26 4.89
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jx4A03
DDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGIGEAKAKYLISLARDEY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jx4A03
DDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGXIGEAKAKYLISLARDEY
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:59

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"