CATH Domain: 1jvnA01 XML data for domain: 1jvnA01

Molscript image for 1jvnA01
1jvnA01
PDB coordinates for domain 1jvnA01

PDB 1jvn, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.880 Gene3D
3.40.50.880.18
3.40.50.880.18.1
3.40.50.880.18.1.1
3.40.50.880.18.1.1.1
3.40.50.880.18.1.1.1.1

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Segment boundaries for domain 1jvnA01

Chopping figure for domain 1jvnA01
DomainStart PDB ResidueStop PDB Residue
1jvnA01 -3 237
1jvnA02 238 551

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.40.50.880.18.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ka9H00 86.58 Thermus thermophilus HB8Imidazole glycerol phosphate synthase subunit hisHProtein binding 3.40.50.880 195 34 81 1.78 2.19
1qdlB00 79.72 Anthranilate synthase component II [EC:4.1.3.27]Phenylalanine, tyrosine and tryptophan biosynthesisSulfolobus solfataricusAnthranilate synthase component IIProtein binding 3.40.50.880 195 18 76 2.89 3.80
2vdjA01 76.88 Homoserine O-succinyltransferase [EC:2.3.1.46]Sulfur metabolismCysteine and methionine metabolismBacillus cereus ATCC 10987Homoserine O-succinyltransferase 3.40.50.880 251 9 76 3.79 4.93
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jvnA01
GSHMPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGK
PIMGIVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKK
KNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jvnA01
GSHMPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGK
PIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEK
KKNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:59

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"