CATH Domain: 1jvmB00 XML data for domain: 1jvmB00

Molscript image for 1jvmB00
1jvmB00
PDB coordinates for domain 1jvmB00

PDB 1jvm, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.70 Gene3D
1.10.287.70.2
1.10.287.70.2.1
1.10.287.70.2.1.2
1.10.287.70.2.1.2.7
1.10.287.70.2.1.2.7.7

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Segment boundaries for domain 1jvmB00

Chopping figure for domain 1jvmB00
DomainStart PDB ResidueStop PDB Residue
1jvmB00 24 123

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 1.10.287.70.2.1.2.7.7 (SIMAX score < 5)

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Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3behA02 88.84 Cyclic nucleotide-gated potassium channel mll3241Mesorhizobium loti 1.10.287.70 103 35 92 2.49 2.70
2h8pC00 86.69 1.10.287.70 57 92 56 0.75 1.32
2r9rB03 86.63 1.10.287.70 111 27 87 2.94 3.36
2qksB02 85.28 Inward rectifier potassium channelMus musculusG protein-activated inward rectifier potassium channel 1Putative inward rectifier potassium channelPotassium inwardly-rectifying channel, subfamily J, member 3 1.10.287.70 102 20 90 3.88 4.30
3jycA02 83.72 1.10.287.70 116 14 78 3.01 3.84
1lnqA01 82.87 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 1.10.287.70 80 27 81 3.35 4.11
2x6cA01 82.73 Inward rectifier potassium channelATP-sensitive inward rectifier potassium channel 10Magnetospirillum magneticum AMB-1 1.10.287.70 87 13 80 3.78 4.70
1g4yB00 82.33 Rattus norvegicusSmall conductance calcium-activated potassium channel protein 2Small conductance calcium-activated potassium channel activityIntegral to membranePotassium ion transport 1.10.287.70 81 4 72 3.03 4.20
1nkdA00 81.22 Regulatory protein ropEscherichia coli 1.10.287.230 59 11 57 2.35 4.07
2h8pD00 81.17 1.20.5.110 43 97 43 0.30 0.69
1sumB02 80.50 Thermotoga maritimaPhosphate transport system proteinPhosphate transport system protein phoU homolog 2 1.20.58.220 117 6 54 1.60 2.92
3csxA00 80.37 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 6 54 1.65 3.02
1ohhG00 80.22 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 94 5 73 3.50 4.78
2r9iA00 79.31 Putative phage capsid proteinCorynebacterium diphtheriae 1.10.287.80 69 8 64 2.31 3.56
1urfA00 78.94 CytoplasmSerine/threonine-protein kinase N1Plasma membraneHomo sapiensActivation of JUN kinase activity 1.10.287.160 81 0 69 3.33 4.82
1gaxA05 78.81 Aminoacyl-tRNA biosynthesisValyl-tRNA synthetase [EC:6.1.1.9]Valyl-tRNA synthetaseValine, leucine and isoleucine biosynthesisThermus thermophilus 1.10.287.380 73 6 62 2.80 4.45
1skvA00 78.58 Protein D-63Sulfolobus virus 1 1.10.287.660 62 4 60 2.33 3.83
1bsmA01 77.68 Superoxide dismutase [Mn/Fe]Propionibacterium freudenreichii subsp. shermanii 1.10.287.990 64 4 62 3.05 4.85
1b3qA01 76.70 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 1.10.287.560 62 4 51 1.50 2.91
1pd3A00 76.00 Nuclear export proteinInfluenza A virus (A/Puerto Rico/8/1934(H1N1)) 1.10.287.230 54 1 55 2.30 4.13
2oyqA04 74.56 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 4 50 2.02 4.00
1jekA00 74.46 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 10 38 1.04 2.73
2py5A04 69.72 DNA polymeraseBacillus phage phi29 1.10.287.690 36 8 37 1.85 4.98
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Displaying entries 1 to 23 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jvmB00
LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF
GLVTAALATWFVGREQERRG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jvmB00
LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF
GLVTAALATWFVGREQERRGHF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:26

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"