CATH Domain: 1jthB00 XML data for domain: 1jthB00

Molscript image for 1jthB00
1jthB00
PDB coordinates for domain 1jthB00

PDB 1jth, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.6
1.20.5.110.6.1
1.20.5.110.6.1.1
1.20.5.110.6.1.1.1
1.20.5.110.6.1.1.1.1

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Segment boundaries for domain 1jthB00

Chopping figure for domain 1jthB00
DomainStart PDB ResidueStop PDB Residue
1jthB00 191 257

Structural Neighbourhood (67 entries)

There are 67 matching structural neighberhood comparisons for CATH ID 1.20.5.110.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 67 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gl2B00 89.42 Mus musculusSyntaxin-7 1.20.5.110 59 37 88 1.84 2.09
1gd2F00 88.55 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 6 95 2.36 2.47
3gwoA00 87.04 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 7 77 1.54 1.98
1l2pA00 86.53 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 8 91 3.22 3.54
1gl2A00 85.24 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 5 79 1.75 2.21
3kpeA00 84.44 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 12 67 1.17 1.74
1svfC00 84.23 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 11 68 1.62 2.36
3e7kA00 83.71 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 1 70 1.71 2.44
1n2dC00 83.60 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 0 56 0.79 1.39
1ybkA00 83.41 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 5 71 2.32 3.24
1ik7A00 83.36 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 9 77 3.11 4.01
1ezjA02 83.24 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 13 74 2.45 3.28
1sfcH00 83.22 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 72 11 93 3.21 3.45
1jocA01 83.14 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 10 61 1.10 1.80
2p2uA01 82.77 Desulfovibrio vulgaris str. HildenboroughHost-nuclease inhibitor protein Gam, putative 1.20.5.170 69 2 95 3.06 3.20
3hd7B00 82.54 Myosin head/neck bindingActomyosinProtein domain specific bindingRattus norvegicusProtein heterodimerization activity 1.20.5.110 98 100 68 1.79 2.62
2basA02 81.43 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 10 65 1.61 2.45
1urqC00 81.41 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 68 5 73 3.46 4.71
2o1kA00 81.28 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 7 56 1.14 2.01
1czqA00 80.98 1.20.5.170 45 4 67 2.70 4.02
1jekA00 80.33 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 7 50 0.91 1.79
1piqA00 80.13 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 12 46 0.53 1.15
2zvoB00 80.08 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 11 76 3.06 4.02
1favA00 79.89 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 2 53 1.15 2.14
1m56D00 79.60 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 14 62 1.84 2.94
1mg1A03 79.58 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 8 65 3.12 4.77
3effK02 78.89 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 6 52 1.04 1.99
1nhlA00 78.82 Vesicle targetingAzurophil granuleCellular membrane fusionSynaptosomal-associated protein 23Protein binding 1.20.5.110 52 3 73 3.35 4.58
2wpqA00 78.76 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 7 65 2.62 3.99
1gu4A00 78.66 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 3 50 2.34 4.61
1aa0A00 78.53 Enterobacteria phage T4Fibritin 1.20.5.320 113 13 55 1.78 3.19
1dh3A00 78.31 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 5 62 2.05 3.27
1kv4A00 78.05 Moricin-1Bombyx mori 1.20.5.750 42 4 49 1.62 3.29
1r8eA03 77.91 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 2 61 2.93 4.79
2e42A00 77.85 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 1 50 2.37 4.67
1u57A00 77.73 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 8 67 2.76 4.11
1gk6B00 77.64 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 0 47 1.03 2.16
2zxeB01 77.59 1.20.5.170 35 2 52 2.07 3.96
1gk4C00 77.52 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 5 50 2.21 4.42
1dp5B00 76.73 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 0 44 0.90 2.01
1gmjD00 76.53 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 8 46 1.66 3.59
2p7jB01 76.35 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 2 58 2.37 4.07
2v4hB00 76.09 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 8 57 2.84 4.97
1hj0A00 75.12 Bos taurusThymosin beta-10 1.20.5.520 41 4 41 0.96 2.30
1pl5A00 75.04 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 4 42 1.08 2.53
1kilE00 74.98 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 4 43 1.18 2.73
2gr7A00 74.81 Haemophilus influenzaeAdhesin 3.30.1300.30 101 1 44 1.52 3.41
1owaA01 74.71 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 12 47 1.91 4.00
1ci6B00 74.40 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 2 35 0.44 1.23
1jmmA01 73.81 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 12 47 1.82 3.81
1hf9A00 73.54 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 4 46 1.62 3.50
1a2xB00 73.11 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 6 46 2.15 4.65
2k37A00 72.99 Bacteriochlorophyll c-binding proteinChlorobaculum tepidumChlorosome envelope protein A 1.20.5.950 59 1 44 1.62 3.62
1vf5C03 72.60 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 9 47 2.12 4.44
1fdoA05 72.08 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 14 40 1.86 4.62
1mqsB00 69.98 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 7 38 1.57 4.05
1tiiC00 69.59 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 11 31 1.43 4.56
1a02F00 69.58 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 1 31 0.48 1.53
2p10B02 68.28 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 15 29 0.59 1.98
2oarE02 67.46 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 9 32 1.31 3.99
1h8bB00 66.84 TitinOryctolagus cuniculus 1.20.5.510 23 8 32 1.37 4.17
1jcdB00 66.22 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 7 28 0.99 3.49
2oarA02 64.76 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 11 25 0.53 2.09
2qiwA02 63.41 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 11 26 0.83 3.09
3c8vA04 62.87 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 21 28 1.39 4.90
1d66B02 59.29 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 22 0.57 2.55
1mkmA02 56.68 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 20 0.68 3.25
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Displaying entries 1 to 67 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jthB00
ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jthB00
ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"