CATH Domain: 1jqjD03 XML data for domain: 1jqjD03

Molscript image for 1jqjD03
1jqjD03
PDB coordinates for domain 1jqjD03

PDB 1jqj, Chain D, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.17
1.10.8.60.17.1
1.10.8.60.17.1.1
1.10.8.60.17.1.1.1
1.10.8.60.17.1.1.1.1

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Segment boundaries for domain 1jqjD03

Chopping figure for domain 1jqjD03
DomainStart PDB ResidueStop PDB Residue
1jqjD01 1 142
1jqjD02 232 317
1jqjD03 143 231

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 1.10.8.60.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jr3D03 90.66 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 95 82 2.71 3.28
1sxjC02 84.69 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 13 76 1.79 2.33
1sxjD02 84.11 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 15 76 2.04 2.66
2z4sA02 83.80 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 13 81 3.48 4.28
1sxjE02 81.74 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 12 73 2.20 3.00
1im2A03 78.91 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.60 94 8 69 2.62 3.79
1l8qA02 78.63 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 16 56 1.49 2.62
1e32A04 76.86 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 87 10 74 3.24 4.34
1tgrA00 76.12 Positive regulation of smooth muscle cell proliferationPositive regulation of DNA replicationPositive regulation of gene-specific transcriptionRegulation of multicellular organism growthPositive regulation of tyrosine phosphorylation of Stat5 protein 1.10.100.10 52 3 54 2.62 4.79
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jqjD03
EQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDATPFHWVDALLMGK
SKRALH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jqjD03
EQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALL
MGKSKRALH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:57

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"