CATH Domain: 1joyA00 XML data for domain: 1joyA00

Molscript image for 1joyA00
1joyA00
PDB coordinates for domain 1joyA00

PDB 1joy, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.130 Gene3D
1.10.287.130.3
1.10.287.130.3.1
1.10.287.130.3.1.1
1.10.287.130.3.1.1.1
1.10.287.130.3.1.1.1.1

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Segment boundaries for domain 1joyA00

Chopping figure for domain 1joyA00
DomainStart PDB ResidueStop PDB Residue
1joyA00 223 289

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 1.10.287.130.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nkdA00 81.04 Regulatory protein ropEscherichia coli 1.10.287.230 59 3 88 3.90 4.43
3csxA00 79.92 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 4 70 3.45 4.92
1jq0A00 79.55 Simian immunodeficiency virusEnvelope glycoprotein 1.10.287.210 71 13 78 3.47 4.40
2f93B00 79.51 Sensory rhodopsin II transducerNatronomonas pharaonisProtein binding 1.10.287.470 51 7 73 2.65 3.62
3hgcA01 79.42 Amiloride-sensitive cation channel 2, neuronalAmiloride-sensitive cation channel 2, neuronalGallus gallus 1.10.287.770 56 8 80 2.63 3.26
1p49A02 79.38 LysosomeSteryl-sulfataseMicrosomeSteryl-sulfatase [EC:3.1.6.2]Plasma membrane 1.10.287.550 59 8 74 3.19 4.27
2p5oA04 78.89 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 55 0 74 2.94 3.94
1nt2B02 78.23 Archaeoglobus fulgidusProtein bindingPutative uncharacterized protein 1.10.287.660 67 8 89 4.28 4.78
2nr5E00 77.71 Shewanella oneidensisPutative uncharacterized protein 1.10.287.750 60 10 89 3.78 4.22
1o9gA02 77.62 RRNA methyltransferase AviRaStreptomyces viridochromogenes 1.10.287.540 43 4 62 2.52 4.02
1ku9A02 76.68 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.287.450 63 9 85 4.20 4.94
2wieA01 75.85 ATP synthase subunit cArthrospira platensis HN01 1.20.20.10 78 5 85 3.65 4.25
1pd3A00 75.09 Nuclear export proteinInfluenza A virus (A/Puerto Rico/8/1934(H1N1)) 1.10.287.230 54 9 73 3.39 4.64
2oyqA04 73.85 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 4 73 3.53 4.83
1y4mA00 73.02 HERV-FRD_6p24.1 provirus ancestral Env polyproteinHomo sapiens 1.10.287.210 53 5 41 1.79 4.28
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1joyA00
MAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1joyA00
MAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLR
BLAST against CATH

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Domain History Events (4)

Classification merge by cuff on 12 Nov 2010 19:19

COMMENT: same function FINAL: merge superfamilies: 1.10.287.240 --> 1.10.287.130

Set cath from cathlist by auto on 05 Mar 2006 18:08

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:08

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"