CATH Domain: 1jnrA03 XML data for domain: 1jnrA03

Molscript image for 1jnrA03
1jnrA03
PDB coordinates for domain 1jnrA03

PDB 1jnr, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.58 Methane Monooxygenase Hydroxylase; Chain G, domain 1
1.20.58.100 Gene3D
1.20.58.100.1
1.20.58.100.1.1
1.20.58.100.1.1.1
1.20.58.100.1.1.1.1
1.20.58.100.1.1.1.1.1

[top]
Segment boundaries for domain 1jnrA03

Chopping figure for domain 1jnrA03
DomainStart PDB ResidueStop PDB Residue
1jnrA01 12 261
1jnrA01 394 487
1jnrA01 615 634
1jnrA02 262 393
1jnrA03 488 608

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 1.20.58.100.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2h88A03 88.52 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrialGallus gallus 1.20.58.100 117 21 81 1.41 1.72
2wdqA03 88.17 Oxidative phosphorylationCitrate cycle (TCA cycle)Metabolic pathwaysButanoate metabolismBenzoate degradation via CoA ligation 1.20.58.100 117 18 81 1.62 1.98
2bs2A03 87.80 Benzoate degradation via CoA ligationButanoate metabolismFumarate reductase flavoprotein subunit [EC:1.3.99.1]Two-component systemCitrate cycle (TCA cycle) 1.20.58.100 118 16 81 1.59 1.94
1knrA03 84.80 Nicotinate and nicotinamide metabolismMetabolic pathwaysAlanine, aspartate and glutamate metabolismL-aspartate oxidase activityL-aspartate oxidase [EC:1.4.3.16] 1.20.58.100 109 25 80 3.01 3.72
1chuA03 83.38 Nicotinate and nicotinamide metabolismMetabolic pathwaysAlanine, aspartate and glutamate metabolismL-aspartate oxidase activityL-aspartate oxidase [EC:1.4.3.16] 1.20.58.100 88 26 72 3.00 4.12
2i0mA01 79.37 Phosphate transport system proteinPhosphate transport system protein phoUStreptococcus pneumoniae 1.20.58.220 106 7 74 3.66 4.92
2jdiH02 69.87 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 1.20.5.440 42 4 34 1.45 4.18
[1]
Displaying entries 1 to 7 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1jnrA03
AYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLHE
LMRAWELVHRVWTAEAHVRHMLFRKETRWPGYYYRTDYPEL
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1jnrA03
AYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLHE
LMRAWELVHRVWTAEAHVRHMLFRKETRWPGYYYRTDYPEL
BLAST against CATH

[top]
Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 16:57

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"