CATH Domain: 1jndA01 XML data for domain: 1jndA01

Molscript image for 1jndA01
1jndA01
PDB coordinates for domain 1jndA01

PDB 1jnd, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.80 Glycosidases Gene3D
3.20.20.80.22
3.20.20.80.22.1
3.20.20.80.22.1.1
3.20.20.80.22.1.1.1
3.20.20.80.22.1.1.1.1

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Segment boundaries for domain 1jndA01

Chopping figure for domain 1jndA01
DomainStart PDB ResidueStop PDB Residue
1jndA01 2 277
1jndA01 372 420
1jndA02 278 371

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.20.20.80.22.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vf8A01 87.58 Mus musculusBeta-N-acetylhexosaminidase activityCytoplasmic membrane-bounded vesicleChitinase-3-like protein 3Sugar binding 3.20.20.80 302 25 93 2.25 2.42
1w9pA01 84.64 Amino sugar and nucleotide sugar metabolismChitinaseChitinase [EC:3.2.1.14]Aspergillus fumigatus 3.20.20.80 332 21 82 2.20 2.66
3fndA01 83.71 ChitinaseBacteroides thetaiotaomicron 3.20.20.80 261 14 81 2.21 2.73
1eokA00 78.05 Endo-beta-N-acetylglucosaminidase F3Elizabethkingia meningoseptica 3.20.20.80 282 9 76 3.24 4.26
1narA00 77.99 NarboninVicia narbonensis 3.20.20.80 289 12 83 3.35 4.00
2uy2A00 76.69 Amino sugar and nucleotide sugar metabolismChitinase [EC:3.2.1.14]Endochitinase activityExtracellular regionFungal-type cell wall 3.20.20.80 287 14 78 3.61 4.60
1ta3A00 76.62 Triticum aestivumXylanase inhibitor protein 1 3.20.20.80 274 13 77 3.52 4.54
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jndA01
SNLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLL
SVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVIVDPHAALHKEQFTALVRDV
KDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVE
YWLSQGFPSNKINLGVADPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jndA01
ASNLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVL
LSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDF
IVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPI
YHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVADPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILR
AIKYRL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:57

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"