CATH Domain: 1jndA01 XML data for domain: 1jndA01

Molscript image for 1jndA01
1jndA01
PDB coordinates for domain 1jndA01

PDB 1jnd, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.80 Glycosidases Gene3D
3.20.20.80.19
3.20.20.80.19.1
3.20.20.80.19.1.1
3.20.20.80.19.1.1.1
3.20.20.80.19.1.1.1.1

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Segment boundaries for domain 1jndA01

Chopping figure for domain 1jndA01
DomainStart PDB ResidueStop PDB Residue
1jndA01 2 277
1jndA01 372 420
1jndA02 278 371

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.20.20.80.19.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vf8A01 87.58 Mus musculusBeta-N-acetylhexosaminidase activityCytoplasmic membrane-bounded vesicleChitinase-3-like protein 3 precursorSugar binding 3.20.20.80 302 25 93 2.25 2.42
1w9pA01 84.64 ChitinaseAminosugars metabolismChitinaseAspergillus fumigatus 3.20.20.80 332 21 82 2.20 2.66
3fndA01 83.71 ChitinaseBacteroides thetaiotaomicron 3.20.20.80 261 14 81 2.21 2.73
1eokA00 78.05 Endo-beta-N-acetylglucosaminidase F3 precursorElizabethkingia meningoseptica 3.20.20.80 282 9 76 3.24 4.26
1narA00 77.99 NarboninVicia narbonensis 3.20.20.80 289 12 83 3.35 4.00
1ta3A00 76.62 3.20.20.80 274 13 77 3.52 4.54
2uy2A00 76.14 Endochitinase precursorEndochitinase activityFungal-type cell wallExtracellular regionCytokinesis (cell division) /septum formation and hydrolysis 3.20.20.80 279 15 76 3.76 4.92
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jndA01
SNLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLL
SVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVIVDPHAALHKEQFTALVRDV
KDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVE
YWLSQGFPSNKINLGVADPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jndA01
ASNLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVL
LSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDF
IVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPI
YHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVADPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILR
AIKYRL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:57

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"