CATH Domain: 1jmxB00 XML data for domain: 1jmxB00

Molscript image for 1jmxB00
1jmxB00
PDB coordinates for domain 1jmxB00

PDB 1jmx, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.130 7 Propellor
2.130.10 Methylamine Dehydrogenase; Chain H
2.130.10.10 YVTN repeat-like/Quinoprotein amine dehydrogenase Gene3D
2.130.10.10.10
2.130.10.10.10.1
2.130.10.10.10.1.1
2.130.10.10.10.1.1.1
2.130.10.10.10.1.1.1.1

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Segment boundaries for domain 1jmxB00

Chopping figure for domain 1jmxB00
DomainStart PDB ResidueStop PDB Residue
1jmxB00 4 349

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.130.10.10.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ri6A00 77.07 Pentose phosphate pathwayMetabolic pathways6-phosphogluconolactonase [EC:3.1.1.31]6-phosphogluconolactonase activity6-phosphogluconolactonase 2.130.10.10 333 10 87 4.37 4.99
1l0qA01 76.82 Methanosarcina mazeiORF492 2.130.10.10 295 16 82 3.75 4.52
1mdaH00 73.82 2.130.10.10 368 5 79 3.96 4.97
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jmxB00
GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL
SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV
AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFATADLLYGYLSVDLKTGKTHTQEF
ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK
NIKLPGGDMSTTTPQVFIR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jmxB00
ADTGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH
ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS
LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL
KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAV
FNPDTLEKVKNIKLPGGDMSTTTPQVFIR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"