CATH Domain: 1jmtA00 XML data for domain: 1jmtA00

Molscript image for 1jmtA00
1jmtA00
PDB coordinates for domain 1jmtA00

PDB 1jmt, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.19
3.30.70.330.19.1
3.30.70.330.19.1.1
3.30.70.330.19.1.1.1
3.30.70.330.19.1.1.1.1

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Segment boundaries for domain 1jmtA00

Chopping figure for domain 1jmtA00
DomainStart PDB ResidueStop PDB Residue
1jmtA00 43 146

Structural Neighbourhood (34 entries)

There are 34 matching structural neighberhood comparisons for CATH ID 3.30.70.330.19.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 34 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2do0A01 85.56 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 15 77 2.28 2.94
1cvjG02 84.62 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 14 78 2.14 2.72
1cvjA01 84.45 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 19 77 2.45 3.16
1no8A00 84.17 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 19 78 2.53 3.22
1x5uA01 84.09 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 17 79 2.48 3.12
1x5oA01 83.76 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 11 78 2.38 3.03
2jwnA01 83.59 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 11 76 2.27 2.99
2u2fA00 82.32 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 8 79 2.85 3.58
1d8zA00 82.16 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 14 79 3.15 3.96
1sjrA00 82.15 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 8 71 2.57 3.60
1sjqA00 82.01 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 17 74 2.43 3.26
1hl6C00 81.64 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 14 66 2.13 3.19
2dgsA01 80.21 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 16 74 3.39 4.55
1kohA01 80.21 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 5 72 2.53 3.49
2errA01 80.13 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 14 78 2.93 3.73
1qm9A02 79.95 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 17 76 3.70 4.83
1fjeB02 79.82 NucleolinMesocricetus auratus 3.30.70.330 84 17 75 2.48 3.28
2u1aA00 79.51 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 10 75 3.06 4.05
1sxlA00 79.36 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 18 79 3.45 4.33
1qm9A01 79.06 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 16 76 2.97 3.88
1fjeB01 79.05 NucleolinMesocricetus auratus 3.30.70.330 81 19 78 3.00 3.82
1in0A01 78.86 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 10 70 2.78 3.95
1konA03 78.15 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 13 62 2.69 4.32
1whvA00 77.38 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 6 66 2.28 3.45
1lfpA03 76.86 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 10 63 2.85 4.50
1vr6A01 76.60 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 6 70 3.40 4.83
3c19A01 76.32 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 9 76 3.81 4.98
1cvjH02 76.12 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 17 42 1.52 3.55
1q5yD00 75.69 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 6 73 3.20 4.36
2gx8C02 75.52 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 6 73 3.65 4.96
1eayD00 75.34 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 7 65 2.83 4.33
1u6fA00 74.70 Trypanosoma cruziRNA-binding protein UBP1 3.30.70.330 139 14 56 2.78 4.95
3sxlA02 73.57 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 16 51 2.34 4.59
1rwuA00 72.87 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 5 74 3.65 4.90
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Displaying entries 1 to 34 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jmtA00
SQTIALLNIYRNPQDGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI
DLNNRWFNGQPIHAELSP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jmtA00
SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED
AEKAVIDLNNRWFNGQPIHAELSP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"