CATH Domain: 1jmoA02 XML data for domain: 1jmoA02

Molscript image for 1jmoA02
1jmoA02
PDB coordinates for domain 1jmoA02

PDB 1jmo, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.39 Alpha-1-antitrypsin; domain 1
2.30.39.10 Alpha-1-antitrypsin, domain 1 Gene3D
2.30.39.10.15
2.30.39.10.15.1
2.30.39.10.15.1.1
2.30.39.10.15.1.1.1
2.30.39.10.15.1.1.1.1

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Segment boundaries for domain 1jmoA02

Chopping figure for domain 1jmoA02
DomainStart PDB ResidueStop PDB Residue
1jmoA01 101 278
1jmoA01 378 426
1jmoA02 279 377
1jmoA02 427 477

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.30.39.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1imvA01 88.91 Negative regulation of angiogenesisHomo sapiensPigment epithelium-derived factorCell proliferationPositive regulation of neurogenesis 2.30.39.10 169 28 84 2.73 3.25
1k9oI02 88.38 Manduca sextaAlaserpinProtein binding 2.30.39.10 161 30 88 1.95 2.21
1hp7A01 83.40 Alpha-1-antitrypsinProtease bindingAlpha-1-antitrypsinHomo sapiensExtracellular space 2.30.39.10 95 24 63 1.64 2.59
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jmoA02
SWVNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRV
VERWQKSMTNRTREVLLPKNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jmoA02
SWVNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRV
VERWQKSMTNRTREVLLPKNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:57

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"