CATH Domain: 1jkvA01 XML data for domain: 1jkvA01

Molscript image for 1jkvA01
1jkvA01
PDB coordinates for domain 1jkvA01

PDB 1jkv, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.1260 Ferritin;
1.20.1260.10 Gene3D
1.20.1260.10.15
1.20.1260.10.15.1
1.20.1260.10.15.1.1
1.20.1260.10.15.1.1.1
1.20.1260.10.15.1.1.1.1

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Segment boundaries for domain 1jkvA01

Chopping figure for domain 1jkvA01
DomainStart PDB ResidueStop PDB Residue
1jkvA01 1 197
1jkvA02 198 266

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 1.20.1260.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qqyA00 82.18 Bacillus anthracisBacterioferritinPutative uncharacterized protein 1.20.1260.10 133 14 65 2.73 4.17
2yw6B00 81.85 Mycobacterium smegmatisDNA protection during starvation proteinStarvation-inducible DNA-binding protein 1.20.1260.10 150 10 73 3.34 4.57
2ib0A01 81.26 Mycobacterium tuberculosisCONSERVED HYPOTHETICAL ALANINE RICH PROTEIN 1.20.1260.10 135 13 67 2.82 4.18
1lrzA03 67.90 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 1.20.58.90 62 16 25 1.09 4.21
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jkvA01
MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYL
LEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYS
MTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jkvA01
MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYL
LEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYS
MTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYG
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 16:56

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"