CATH Domain: 1jkmA00 XML data for domain: 1jkmA00

Molscript image for 1jkmA00
1jkmA00
PDB coordinates for domain 1jkmA00

PDB 1jkm, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1820 Gene3D
3.40.50.1820.19
3.40.50.1820.19.1
3.40.50.1820.19.1.1
3.40.50.1820.19.1.1.1
3.40.50.1820.19.1.1.1.1

[top]
Segment boundaries for domain 1jkmA00

Chopping figure for domain 1jkmA00
DomainStart PDB ResidueStop PDB Residue
1jkmA00 13 370

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.40.50.1820.19.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2wirA00 85.48 Pyrobaculum calidifontis JCM 11548Alpha/beta hydrolase fold-3 domain protein 3.40.50.1820 309 31 84 2.29 2.71
3h04A00 76.98 Staphylococcus aureus subsp. aureus Mu50Putative uncharacterized protein 3.40.50.1820 272 13 63 2.56 4.02
3bjrA00 76.96 Lipase/esterase (Putative)Lactobacillus plantarum 3.40.50.1820 241 14 63 3.04 4.75
1orvA02 76.40 Sus scrofaDipeptidyl peptidase 4Dipeptidyl-peptidase 4 [EC:3.4.14.5] 3.40.50.1820 258 14 66 2.85 4.27
1xfdA02 75.89 Homo sapiensDipeptidyl aminopeptidase-like protein 6Dipeptidyl-peptidase activity 3.40.50.1820 259 13 67 3.08 4.56
[1]
Displaying entries 1 to 5 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1jkmA00
PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETS
TETILGVDGNEITLHVFRPAGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEGHHPFPS
GVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSL
VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVAARV
NIGLVHGADVIFRHWLPAALESTVRDVAGFAADRARLR
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1jkmA00
YTPPGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDV
ETSTETILGVDGNEITLHVFRPAGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEGHHP
FPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTEL
PSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVA
ARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRARLR
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:45

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"