CATH Domain: 1ji7A00 XML data for domain: 1ji7A00

Molscript image for 1ji7A00
1ji7A00
PDB coordinates for domain 1ji7A00

PDB 1ji7, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.50 Transcription Factor, Ets-1 Gene3D
1.10.150.50.1
1.10.150.50.1.1
1.10.150.50.1.1.1
1.10.150.50.1.1.1.1
1.10.150.50.1.1.1.1.1

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Segment boundaries for domain 1ji7A00

Chopping figure for domain 1ji7A00
DomainStart PDB ResidueStop PDB Residue
1ji7A00 15 91

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 1.10.150.50.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sv0D00 90.67 ETS-domain lackingNegative regulation of transcriptionRegulation of epidermal growth factor receptor signaling pathwayRegulation of Ras protein signal transductionDrosophila melanogaster 1.10.150.50 81 30 91 2.24 2.45
1x66A01 88.83 Sequence-specific DNA binding transcription factor activityHemostasisOrgan morphogenesisHomo sapiensFriend leukemia integration 1 transcription factor 1.10.150.50 70 32 88 1.81 2.05
1sxdA00 85.33 Mus musculusGA-binding protein alpha chainIn utero embryonic developmentNucleusNegative regulation of transcription from RNA polymerase II promoter 1.10.150.50 91 32 82 1.99 2.41
1pk3A00 83.91 PRC1 complexIdentical protein bindingNegative regulation of transcriptionPolycomb protein ScmAxonogenesis 1.10.150.50 76 25 90 3.46 3.81
1z1vA00 83.06 Protein kinase regulator activitySAM domain bindingProtein STE50Signal transduction involved in filamentous growthPheromone-dependent signal transduction involved in conjugation with cellular fusion 1.10.150.50 70 18 84 3.54 4.20
3h8mA00 80.03 EphA7 [EC:2.7.10.1]Homo sapiensEphrin type-A receptor 7Axon guidance 1.10.150.50 71 12 77 3.43 4.42
1b4fA00 78.59 Ephrin type-B receptor 2Homo sapiensTransmembrane-ephrin receptor activity 1.10.150.50 74 8 77 3.17 4.08
3kkaD00 76.22 Integral to plasma membraneEphrin type-A receptor 2Protein bindingSignal transductionEph receptor A2 [EC:2.7.10.1] 1.10.150.50 68 8 76 3.46 4.53
1oxjA01 76.21 Cytoplasmic mRNA processing bodyNuclear-transcribed mRNA poly(A) tail shorteningEstablishment of RNA localizationProtein SmaugDrosophila melanogaster 1.10.150.50 61 9 75 3.26 4.35
1x9xA00 76.11 MAPK signaling pathway - yeastSAM domain bindingIdentical protein bindingInvasive growth in response to glucose limitationActivation of MAPKK activity 1.10.150.50 62 8 71 3.32 4.67
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ji7A00
SIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFENGKALLLLTKEDFRYRSPHSGDELYELLQHILKQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ji7A00
SIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEXNGKALLLLTKEDFRYRSPHSGDELYELLQHILKQRDH
HHHHHHRHD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:25

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"