CATH Domain: 1ji6A03 XML data for domain: 1ji6A03

Molscript image for 1ji6A03
1ji6A03
PDB coordinates for domain 1ji6A03

PDB 1ji6, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.100 Aligned Prism
2.100.10 Vitelline Membrane Outer Layer Protein I, subunit A
2.100.10.10 Gene3D
2.100.10.10.4
2.100.10.10.4.1
2.100.10.10.4.1.1
2.100.10.10.4.1.1.1
2.100.10.10.4.1.1.1.1

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Segment boundaries for domain 1ji6A03

Chopping figure for domain 1ji6A03
DomainStart PDB ResidueStop PDB Residue
1ji6A01 64 290
1ji6A02 291 301
1ji6A02 501 651
1ji6A03 302 500

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.100.10.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1c3kA00 75.95 Helianthus tuberosusLectin 1 2.100.10.30 143 6 70 3.09 4.39
1ugxA00 75.37 IgA bindingArtocarpus integerAgglutinin alpha chainSugar binding 2.100.10.30 133 8 64 3.01 4.64
2bmzA00 75.35 Musa acuminataRipening-associated protein 2.100.10.30 141 7 68 3.42 4.97
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ji6A03
RDIFTDPIFSLNTLQEYGPTFLSIENSIRKPHLFDYLQGIEFHTRLQPGYFGKDSFNYWSGNYVETRPSIGSSKTITSPF
YGDKSTEPVQKLSFDGQKVYRTIANTDVAAWPNGKVYLGVTKVDFSQYDDQKNETSTQTYDSKRNNGHVSAQDSIDQLPP
ETTDEPLEKAYSHQLNYAECFLMQDRRGTIPFFTWTHRS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ji6A03
RDIFTDPIFSLNTLQEYGPTFLSIENSIRKPHLFDYLQGIEFHTRLQPGYFGKDSFNYWSGNYVETRPSIGSSKTITSPF
YGDKSTEPVQKLSFDGQKVYRTIANTDVAAWPNGKVYLGVTKVDFSQYDDQKNETSTQTYDSKRNNGHVSAQDSIDQLPP
ETTDEPLEKAYSHQLNYAECFLMQDRRGTIPFFTWTHRS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:56

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"