CATH Domain: 1ji1A03 XML data for domain: 1ji1A03

Molscript image for 1ji1A03
1ji1A03
PDB coordinates for domain 1ji1A03

PDB 1ji1, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.1180 Golgi alpha-mannosidase II Gene3D
2.60.40.1180.8
2.60.40.1180.8.1
2.60.40.1180.8.1.1
2.60.40.1180.8.1.1.1
2.60.40.1180.8.1.1.1.1

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Segment boundaries for domain 1ji1A03

Chopping figure for domain 1ji1A03
DomainStart PDB ResidueStop PDB Residue
1ji1A01 1 124
1ji1A02 125 547
1ji1A03 548 637

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wzlA04 89.53 Neopullulanase 2Thermoactinomyces vulgaris 2.60.40.1180 83 22 90 1.80 2.00
1j0hA04 86.09 NeopullulanaseGeobacillus stearothermophilus 2.60.40.1180 83 15 88 2.29 2.58
1ea9C04 85.31 Bacillus sp.Cyclomaltodextrinase 2.60.40.1180 81 23 88 2.22 2.50
1ktbA02 84.85 Alpha-N-acetylgalactosaminidaseGallus gallus 2.60.40.1180 91 11 89 2.48 2.79
3edfA03 84.72 CyclomaltodextrinaseFlavobacterium sp. 92 2.60.40.1180 80 16 86 2.53 2.92
1e43A03 84.60 Alpha-amylaseBacillus amyloliquefaciens 2.60.40.1180 87 13 87 2.45 2.79
1ua7A02 84.32 Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways 2.60.40.1180 78 21 85 2.51 2.93
1g5aA04 83.71 AmylosucraseNeisseria polysaccharea 2.60.40.1180 74 16 80 2.87 3.59
3hg3B02 83.18 Galactose metabolismAlpha-galactosidase AExtracellular regionGlycosphingolipid catabolic processGlycosphingolipid biosynthesis - globo series 2.60.40.1180 101 7 82 2.23 2.71
3cc1A02 83.15 BH1870 proteinBacillus halodurans 2.60.40.1180 84 8 84 2.98 3.53
1uokA03 82.79 Bacillus cereusOligo-1,6-glucosidase 2.60.40.1180 78 15 81 2.37 2.92
1m7xA03 82.70 Starch and sucrose metabolismMetabolic pathways1,4-alpha-glucan branching enzyme [EC:2.4.1.18]Glycogen biosynthetic process1,4-alpha-glucan-branching enzyme 2.60.40.1180 106 12 75 2.47 3.27
1zjaA03 82.62 Pseudomonas mesoacidophilaSucrose isomerase 2.60.40.1180 78 11 80 2.55 3.19
1iv8A05 81.86 Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme 2.60.40.1180 66 21 71 2.16 3.04
1gjwA02 81.82 Thermotoga maritimaMaltodextrin glycosyltransferase 2.60.40.1180 68 16 74 2.49 3.34
1lwjA03 81.21 4-alpha-glucanotransferase [EC:2.4.1.25]Thermotoga maritimaStarch and sucrose metabolism4-alpha-glucanotransferaseMetabolic pathways 2.60.40.1180 50 18 55 1.03 1.85
1kwgA03 77.91 Beta-galactosidaseThermus thermophilus 2.60.40.1180 50 10 55 2.61 4.70
1ht6A02 77.30 Alpha-amylase type A isozymeHordeum vulgare 2.60.40.1180 57 14 63 2.87 4.53
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Displaying entries 1 to 18 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ji1A03
YPALRTGSFMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGHSYTVQNGMVTVAV
DGHYGAVLAQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ji1A03
YPALRTGSFMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGHSYTVQNGMVTVAV
DGHYGAVLAQ
BLAST against CATH

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Domain History Events (7)

Domain assigned by lewis on 09 Jan 2007 13:16

Assigning domain 1ji1A03 to 2.60.40.1180 (as agreed with the CATH update team) after the chain has been rechopped. The reason is that the domain is very similar to the old domain 1ji1A05 (from the previous chopping at "Sun Mar 5 16:56:33 2006") which was in 2.60.40.1180 at the time the chain was unchopped.

Flow stage update by auto on 15 Dec 2006 07:35

No satisfactory AssignClose result found.

Flow stage update by auto on 15 Dec 2006 07:33

No in_process hits for Domain "1ji1A03" ready to be processed

Flow stage update by auto on 15 Dec 2006 07:33

NW result present for Domain "1ji1A03"

Flow stage update by auto on 14 Dec 2006 15:49

All required files are present for Domain "1ji1A03"

Flow stage update by auto on 13 Dec 2006 19:36

Beginning processing for Domain "1ji1A03"

Insertion by cuff on 13 Dec 2006 16:18

nice batch of choppings