CATH Domain: 1jggA00 XML data for domain: 1jggA00

Molscript image for 1jggA00
1jggA00
PDB coordinates for domain 1jggA00

PDB 1jgg, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.10
1.10.10.60.10.1
1.10.10.60.10.1.1
1.10.10.60.10.1.1.1
1.10.10.60.10.1.1.1.1

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Segment boundaries for domain 1jggA00

Chopping figure for domain 1jggA00
DomainStart PDB ResidueStop PDB Residue
1jggA00 103 159

Structural Neighbourhood (28 entries)

There are 28 matching structural neighberhood comparisons for CATH ID 1.10.10.60.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 28 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1au7A02 95.11 Positive regulation of transcription from RNA polymerase II promoterRattus norvegicusNucleusNegative regulation of transcription from RNA polymerase II promoterAdenohypophysis development 1.10.10.60 57 31 100 0.86 0.86
1o4xA02 94.38 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 33 92 0.82 0.88
1b8iA00 93.80 Protein domain specific bindingDrosophila melanogasterPositive regulation of muscle organ developmentMesodermal cell fate specificationTranscription repressor activity 1.10.10.60 62 50 91 2.88 3.13
2dmqA01 93.39 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 26 91 1.12 1.23
1mh3A03 93.11 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 23 89 1.14 1.27
1b8iB00 92.11 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 28 94 1.12 1.18
1b72A00 91.94 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 56 83 1.85 2.21
1e3oC02 91.75 POU domain transcription factor, class 2POU domain, class 2, transcription factor 1Protein bindingSequence-specific DNA binding transcription factor activityNegative regulation of transcription, DNA-dependent 1.10.10.60 48 31 84 1.03 1.22
1nk3P00 90.56 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 40 90 1.04 1.15
1pufB00 88.58 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 29 78 1.65 2.11
1wjhA00 87.43 1.10.10.60 76 24 75 2.24 2.99
1le8B00 87.20 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 28 75 1.47 1.94
1lfbA00 86.94 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 21 71 1.38 1.93
1mnmC00 85.95 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 29 72 1.65 2.27
1w0tA00 85.17 Protein homooligomerizationPositive regulation of mitotic cell cycleTelomere maintenance via telomere shorteningNegative regulation of telomerase activityG2/M transition of mitotic cell cycle 1.10.10.60 52 11 85 3.12 3.63
1ic8A02 85.02 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 21 71 1.33 1.86
1fexA00 84.38 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 10 86 2.66 3.08
1gv2A02 84.26 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 15 78 2.67 3.38
1iv6A00 83.82 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 12 94 3.77 3.98
1bobA03 83.72 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 11 92 2.99 3.22
1gdtB03 82.38 Transposon gamma-delta resolvaseEscherichia coli K-12 1.10.10.60 45 6 75 3.00 3.98
1wh5A00 82.24 Arabidopsis thalianaZF-HD homeobox protein At5g65410 1.10.10.60 80 21 71 3.19 4.48
1hq1A00 81.47 Protein exportBacterial secretion systemEscherichia coli O157:H7Signal recognition particle proteinSignal recognition particle subunit SRP54 1.10.260.30 76 8 75 3.37 4.49
2k9nA02 81.18 MYB24Trichomonas vaginalis 1.10.10.60 54 5 87 3.34 3.81
3bqzA01 79.49 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 14 85 4.25 4.94
3f0cA01 75.85 Cytophaga hutchinsonii ATCC 33406Transcriptional regulator 1.10.10.60 47 10 71 3.56 4.95
3dewA01 74.39 TetR/AcrR family transcriptional regulatorTranscriptional regulator, TetR familyGeobacter sulfurreducens 1.10.10.60 50 12 75 3.33 4.41
1hlvA02 74.17 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 60 14 81 3.81 4.67
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Displaying entries 1 to 28 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jggA00
RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jggA00
VRRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"