CATH Domain: 1jg8A01 XML data for domain: 1jg8A01

Molscript image for 1jg8A01
1jg8A01
PDB coordinates for domain 1jg8A01

PDB 1jg8, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.16
3.40.640.10.16.1
3.40.640.10.16.1.1
3.40.640.10.16.1.1.1
3.40.640.10.16.1.1.1.1

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Segment boundaries for domain 1jg8A01

Chopping figure for domain 1jg8A01
DomainStart PDB ResidueStop PDB Residue
1jg8A01 5 250
1jg8A02 251 346

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 3.40.640.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1svvA01 85.92 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 18 96 2.22 2.29
1o69A01 83.32 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 15 86 3.34 3.84
1bs0A02 83.15 Biotin metabolismMetabolic pathways8-amino-7-oxononanoate synthase [EC:2.3.1.47]8-amino-7-oxononanoate synthase activityBiotin biosynthetic process 3.40.640.10 228 16 90 3.34 3.70
1o4sA02 83.09 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 15 83 2.71 3.24
1mdoA01 83.05 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.40.640.10 226 19 83 2.60 3.11
1fc4A01 82.08 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 16 89 3.44 3.85
2oatA02 81.61 Ornithine--oxo-acid transaminase [EC:2.6.1.13]Arginine and proline metabolismOrnithine-oxo-acid transaminase activityVisual perceptionHomo sapiens 3.40.640.10 250 11 87 3.23 3.70
1gd9A02 81.52 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 16 82 2.66 3.21
1sffA02 81.39 Valine, leucine and isoleucine degradationPropanoate metabolismMetabolic pathwaysButanoate metabolismBeta-Alanine metabolism 3.40.640.10 260 10 84 3.58 4.23
1xi9A02 80.95 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 19 88 3.06 3.47
1p3wA02 80.92 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 15 89 3.84 4.29
3dydA02 80.87 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 9 91 3.33 3.66
2gsaA02 80.77 Porphyrin and chlorophyll metabolismGlutamate-1-semialdehyde 2,1-aminomutaseGlutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]Synechococcus elongatus PCC 6301Metabolic pathways 3.40.640.10 249 14 86 3.77 4.37
1m32A02 80.56 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.40.640.10 237 11 85 3.63 4.24
2yrrA02 80.35 Thermus thermophilus HB8Aminotransferase, class V 3.40.640.10 241 15 87 3.57 4.07
2qmaA03 80.32 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.40.640.10 238 12 84 3.23 3.84
1zodA02 80.27 2,2-dialkylglycine decarboxylaseBurkholderia cepacia 3.40.640.10 264 12 84 3.62 4.29
1fg7A01 79.86 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 15 79 3.23 4.06
1d2fA02 79.84 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 12 89 3.60 4.01
1t3iB02 79.80 Cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]Probable cysteine desulfuraseThiamine metabolismSelenoamino acid metabolismMetabolic pathways 3.40.640.10 258 12 80 3.37 4.18
3k40A02 79.70 Dopamine biosynthetic process from tyrosineDevelopmental pigmentationGrowthProtein bindingDrosophila melanogaster 3.40.640.10 267 10 82 3.71 4.48
1s0aA02 79.63 Biotin metabolismMetabolic pathwaysAdenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEscherichia coli K-12 3.40.640.10 268 13 83 3.89 4.65
3ffhB02 79.51 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 12 80 3.28 4.10
1c7nA02 79.33 Treponema denticolaHemolysin 3.40.640.10 225 12 84 3.49 4.15
1uu1A02 79.04 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 203 15 77 3.48 4.51
3ftbA02 78.81 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 13 85 3.08 3.59
1ajsB02 76.77 Tyrosine metabolismArginine and proline metabolismSus scrofaAspartate aminotransferase [EC:2.6.1.1]Aspartate aminotransferase, cytoplasmic 3.40.640.10 278 11 79 3.48 4.38
2hoxA02 76.69 Alliin lyase 1Allium sativum 3.40.640.10 210 9 72 3.45 4.78
3d6kA02 76.68 Corynebacterium diphtheriaePutative uncharacterized protein 3.40.640.10 237 12 84 4.19 4.96
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Displaying entries 1 to 29 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jg8A01
MIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEA
DSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKE
HGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGI
IALTK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jg8A01
GPHMMIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEV
ILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICT
IAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVL
AAAGIIALTK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:56

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"