CATH Domain: 1jekA00 XML data for domain: 1jekA00

Molscript image for 1jekA00
1jekA00
PDB coordinates for domain 1jekA00

PDB 1jek, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.440 Gene3D
1.20.5.440.1
1.20.5.440.1.1
1.20.5.440.1.1.1
1.20.5.440.1.1.1.1
1.20.5.440.1.1.1.1.1

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Segment boundaries for domain 1jekA00

Chopping figure for domain 1jekA00
DomainStart PDB ResidueStop PDB Residue
1jekA00 546 585

Structural Neighbourhood (58 entries)

There are 58 matching structural neighberhood comparisons for CATH ID 1.20.5.440.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 58 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1r8eA03 91.95 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 12 86 1.00 1.16
1ifpA00 89.00 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 15 86 1.14 1.32
1hf9A00 88.44 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 2 87 1.59 1.81
1ybkA00 88.20 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 7 76 1.15 1.50
1s5lX00 88.17 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 7 90 3.29 3.66
3effK02 87.44 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 12 80 1.34 1.68
1t6aA01 87.36 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 2 74 1.74 2.34
1gmjD00 87.01 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 10 71 0.87 1.22
2k1aA00 86.04 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 2 92 3.30 3.55
1kilE00 86.04 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 10 63 0.59 0.93
1ik7A00 85.71 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 12 67 1.01 1.50
1hj0A00 84.89 Bos taurusThymosin beta-10 1.20.5.520 41 2 68 1.48 2.17
2qjyC01 84.64 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 12 67 1.65 2.44
1omiA02 84.60 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 11 65 1.04 1.60
1xrdA01 84.48 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 7 79 2.22 2.81
1l2pA00 83.86 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 12 65 1.76 2.68
1e5wA04 83.83 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 10 70 2.16 3.05
1vf5C03 83.56 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 6 60 0.66 1.10
1kv4A00 83.52 Moricin-1Bombyx mori 1.20.5.750 42 12 78 2.99 3.81
2zjsE00 83.51 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 12 71 1.30 1.81
2v7qJ00 83.48 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 43 12 72 1.57 2.18
2w83C00 83.30 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 7 59 1.25 2.09
1go9A00 82.62 1.20.5.480 39 7 82 3.15 3.82
1uixA00 82.49 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 17 58 0.98 1.67
1fdoA05 82.18 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 11 62 1.46 2.34
1rh5B00 81.83 Protein transport protein SEC61 subunit gamma and related proteinsProtein exportMethanocaldococcus jannaschiiPreprotein translocase subunit secE 1.20.5.820 56 5 71 3.42 4.79
2b9bA04 81.42 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 7 53 2.17 4.08
1kmiZ01 80.98 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 6 70 3.11 4.44
1vl2B03 80.93 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 6 75 2.33 3.11
1vl2A03 80.69 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 32 6 80 3.69 4.61
1wa9B03 79.87 Regulation of circadian sleep/wake cycle, sleepPeriod circadian proteinNucleusResponse to temperature stimulusNegative regulation of transcription from RNA polymerase II promoter 1.20.5.770 33 15 57 1.83 3.18
1pl5A00 79.47 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 7 53 1.53 2.87
1h8bB00 79.46 TitinOryctolagus cuniculus 1.20.5.510 23 13 47 0.41 0.86
2p10B02 78.75 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 15 62 2.06 3.30
1ij5A01 78.30 Physarum polycephalumPlasmodial-specific protein LAV1-2 1.20.58.90 75 15 53 1.69 3.17
3bz1H01 77.61 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 51 5 56 2.23 3.92
3c8vA04 77.14 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 5 47 0.86 1.81
2wpqA00 76.48 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 5 40 0.83 2.05
2zvoB00 75.77 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 17 45 1.39 3.06
2k37A00 75.54 Bacteriochlorophyll c-binding proteinChlorobaculum tepidumChlorosome envelope protein A 1.20.5.950 59 7 61 2.84 4.65
1ozhA03 75.10 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 16 45 1.55 3.44
2qiwA02 74.92 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 11 45 0.83 1.84
1fs0E02 74.88 Oxidative phosphorylationMetabolic pathwaysATP synthase epsilon chainF-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]Escherichia coli K-12 1.20.5.440 38 10 37 0.14 0.37
2g8yA03 74.55 Uncharacterized oxidoreductase [EC:1.1.1.-]Uncharacterized oxidoreductase ybiCEscherichia coli K-12 1.20.5.460 28 3 52 2.46 4.69
2gm6A01 73.66 Ralstonia eutropha JMP134Cysteine dioxygenase type I 1.20.5.440 38 5 42 0.95 2.24
2jo1A00 73.40 Muscle contractionIntegral to plasma membraneFXYD domain-containing ion transport regulator 1PhospholemmanHomo sapiens 1.20.5.780 72 7 55 2.59 4.66
3cp1A00 73.30 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 73 5 34 0.48 1.40
1onvB00 71.31 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 9 47 2.07 4.36
1fxkC00 70.83 Methanothermobacter thermautotrophicus str. Delta HPrefoldin subunit alphaPrefoldin alpha subunit 1.10.287.370 133 7 30 1.20 3.99
1d66B02 70.72 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 37 0.59 1.57
2o01J01 70.41 Photosystem I reaction center subunit IXSpinacia oleracea 1.20.5.510 25 0 42 1.69 3.98
1d7mA00 70.07 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 12 32 1.28 3.92
2ra7A00 68.94 Focal adhesion kinase 1Integrin-mediated signaling pathwayCytoskeletonFocal adhesionHomo sapiens 1.20.120.330 128 10 30 1.23 4.04
1mkmA02 68.69 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 35 0.53 1.51
2b5uA02 68.09 Colicin-E3Escherichia coli 1.10.287.620 161 12 24 0.70 2.82
1fs0G02 67.78 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportATP synthase gamma chainF-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] 1.10.287.80 89 15 29 0.90 3.08
1k04A02 67.45 Focal adhesion kinase 1Integrin-mediated signaling pathwayCytoskeletonFocal adhesionHomo sapiens 1.20.120.330 104 17 26 0.85 3.16
2prrA01 59.04 Ralstonia eutropha JMP134Alkylhydroperoxidase AhpD core:Uncharacterised peroxidase-related 1.20.5.810 52 5 26 1.16 4.31
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Displaying entries 1 to 58 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jekA00
QSLANATAAQQEVLEASYAMVQHIAKGIRILEARVARVEA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jekA00
XQSLANATAAQQEVLEASYAMVQHIAKGIRILEARVARVEAX
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"