CATH Domain: 1jd0B00 XML data for domain: 1jd0B00

Molscript image for 1jd0B00
1jd0B00
PDB coordinates for domain 1jd0B00

PDB 1jd0, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.200 Carbonic Anhydrase II
3.10.200.10 Carbonic Anhydrase II Gene3D
3.10.200.10.2
3.10.200.10.2.1
3.10.200.10.2.1.1
3.10.200.10.2.1.1.1
3.10.200.10.2.1.1.1.1

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Segment boundaries for domain 1jd0B00

Chopping figure for domain 1jd0B00
DomainStart PDB ResidueStop PDB Residue
1jd0B00 5 261

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.10.200.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2w2jA00 89.82 Nitrogen metabolismCarbonic anhydrase-related proteinCarbonic anhydrase [EC:4.2.1.1]Homo sapiensCarbonate dehydratase activity 3.10.200.10 268 32 93 1.59 1.70
3fw3B00 89.66 Nitrogen metabolismMembrane fractionCarbonic anhydrase [EC:4.2.1.1]Homo sapiensProximal tubule bicarbonate reclamation 3.10.200.10 255 34 93 2.13 2.29
1kopA00 87.41 Nitrogen metabolismNeisseria gonorrhoeaeCarbonic anhydraseCarbonic anhydrase [EC:4.2.1.1] 3.10.200.10 223 30 82 1.47 1.78
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jd0B00
WTYFGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSDMHIQGLQS
RYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQ
HVKYKGQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMI
NNFRQVQKFDERLVYTSFS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jd0B00
ASKWTYFGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSDMHIQG
LQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFS
HLQHVKYKGQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPR
EMINNFRQVQKFDERLVYTSFSQ
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:52

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:52

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:16

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"