CATH Domain: 1jb7A02 XML data for domain: 1jb7A02

Molscript image for 1jb7A02
1jb7A02
PDB coordinates for domain 1jb7A02

PDB 1jb7, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.12
2.40.50.140.12.1
2.40.50.140.12.1.1
2.40.50.140.12.1.1.1
2.40.50.140.12.1.1.1.1

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Segment boundaries for domain 1jb7A02

Chopping figure for domain 1jb7A02
DomainStart PDB ResidueStop PDB Residue
1jb7A01 37 210
1jb7A02 211 326
1jb7A03 327 495

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 2.40.50.140.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jmcA02 83.44 Replication factor A1DNA-dependent DNA replicationNucleotide excision repairDNA replicationPML body 2.40.50.140 124 14 83 2.90 3.46
1miuA03 82.56 HemopoiesisInner cell mass cell proliferationResponse to X-rayPositive regulation of mitotic cell cycleDNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator 2.40.50.140 117 9 86 2.83 3.28
1fguB01 82.04 Replication factor A1DNA-dependent DNA replicationDNA replicationNucleotide excision repairReplication protein A 70 kDa DNA-binding subunit 2.40.50.140 105 9 74 2.09 2.82
2oq0B02 80.27 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 86 10 71 2.60 3.63
1ltlA02 79.25 Methanothermobacter thermautotrophicus str. Delta HDNA replication initiator (Cdc21/Cdc54)Replicative DNA helicase Mcm [EC:3.6.1.-] 2.40.50.140 100 11 74 2.48 3.35
1nnxA00 78.91 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 11 68 2.29 3.36
1lm0A00 78.16 Cytochrome c-type biogenesis protein ccmECytochrome c-type biogenesis protein CcmEShewanella oneidensis 2.40.50.140 101 6 71 2.47 3.45
2vw9B00 77.80 Homologous recombinationDNA replicationHelicobacter pyloriSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 105 7 65 2.64 4.03
1wocC00 76.52 Homologous recombinationPrimosomal replication protein NEscherichia coli K-12Primosomal replication protein n 2.40.50.140 98 6 64 2.26 3.50
2jqoA01 76.23 Bacillus subtilisUncharacterized protein yobA 2.40.50.140 88 5 57 2.57 4.45
1jb7A01 75.92 Telomere-binding protein subunit alphaSterkiella nova 2.40.50.140 174 14 62 2.91 4.65
2hqlA01 75.52 Uncharacterized protein MG376 homologMycoplasma pneumoniae 2.40.50.140 91 5 63 2.97 4.66
1g29102 74.08 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 24 38 1.28 3.30
3d31A02 72.27 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 10 39 1.98 4.99
1oxxK02 70.44 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 13 37 1.71 4.51
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1jb7A02
YTALNKAQAQKGDFDVVAKILQVHELDEYTNELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLIL
SHYSNIITFIQSSKLAKELRAKIQDDHSVEVASLKK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1jb7A02
YTALNKAQAQKGDFDVVAKILQVHELDEYTNELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLIL
SHYSNIITFIQSSKLAKELRAKIQDDHSVEVASLKK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:55

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"