CATH Domain: 1ja1A04 XML data for domain: 1ja1A04

Molscript image for 1ja1A04
1ja1A04
PDB coordinates for domain 1ja1A04

PDB 1ja1, Chain A, Domain 4

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.80 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module Gene3D
3.40.50.80.5
3.40.50.80.5.1
3.40.50.80.5.1.1
3.40.50.80.5.1.1.1
3.40.50.80.5.1.1.1.1

[top]
Segment boundaries for domain 1ja1A04

Chopping figure for domain 1ja1A04
DomainStart PDB ResidueStop PDB Residue
1ja1A01 64 235
1ja1A02 271 324
1ja1A02 451 518
1ja1A03 325 450
1ja1A04 519 676

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.40.50.80.5.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1f20A01 93.06 Response to heatNegative regulation of insulin secretionSynapseAmino acid bindingNuclear membrane 3.40.50.80 163 36 96 1.09 1.13
2rc5A02 87.38 Leptospira interrogansFerredoxin--NADP reductase 3.40.50.80 161 22 93 2.39 2.57
1krhA03 83.55 Benzoate 1,2-dioxygenase electron transfer componentAcinetobacter sp. ADP1 3.40.50.80 134 19 80 2.89 3.60
1qfjA02 81.39 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 3.40.50.80 135 17 79 2.89 3.62
1cqxA03 81.05 Nitric oxide dioxygenase [EC:1.14.12.17]Ralstonia eutropha H16Flavohemoprotein 3.40.50.80 142 13 79 2.89 3.65
1ep3B02 80.94 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 3.40.50.80 117 17 73 2.84 3.87
2piaA02 80.82 Burkholderia cepaciaPhthalate dioxygenase reductase 3.40.50.80 121 17 75 2.83 3.76
2r6hA02 78.95 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 3.40.50.80 114 16 67 2.88 4.25
2gpjA02 78.34 Siderophore-interacting proteinShewanella putrefaciens CN-32 3.40.50.80 142 9 74 3.64 4.92
[1]
Displaying entries 1 to 9 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1ja1A04
RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSRE
QAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNV
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1ja1A04
RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSRE
QAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNV
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:55

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"