CATH Domain: 1ja1A02 XML data for domain: 1ja1A02

Molscript image for 1ja1A02
1ja1A02
PDB coordinates for domain 1ja1A02

PDB 1ja1, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.12
2.40.30.10.12.1
2.40.30.10.12.1.1
2.40.30.10.12.1.1.1
2.40.30.10.12.1.1.1.1

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Segment boundaries for domain 1ja1A02

Chopping figure for domain 1ja1A02
DomainStart PDB ResidueStop PDB Residue
1ja1A01 64 235
1ja1A02 271 324
1ja1A02 451 518
1ja1A03 325 450
1ja1A04 519 676

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.40.30.10.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2piaA01 83.40 Burkholderia cepaciaPhthalate dioxygenase reductase 2.40.30.10 104 13 80 3.34 4.16
1ep3B01 82.01 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 2.40.30.10 99 14 75 2.15 2.85
2r6hA01 81.51 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 9 71 2.36 3.29
1qfjA01 81.47 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 8 71 2.20 3.09
2gpjA01 80.44 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 12 74 2.15 2.88
1kzlA02 79.55 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 8 70 2.97 4.21
1i8dA01 79.04 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 12 72 3.37 4.67
1i8dC02 76.21 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 10 62 2.99 4.80
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ja1A02
NQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPLQARYYAIASSSKVHPNSVHICAVAV
EYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ja1A02
NQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPLQARYYAIASSSKVHPNSVHICAVAV
EYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:55

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"