CATH Domain: 1ja1A01 XML data for domain: 1ja1A01

Molscript image for 1ja1A01
1ja1A01
PDB coordinates for domain 1ja1A01

PDB 1ja1, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.360 Gene3D
3.40.50.360.7
3.40.50.360.7.1
3.40.50.360.7.1.1
3.40.50.360.7.1.1.1
3.40.50.360.7.1.1.1.1

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Segment boundaries for domain 1ja1A01

Chopping figure for domain 1ja1A01
DomainStart PDB ResidueStop PDB Residue
1ja1A01 64 235
1ja1A02 271 324
1ja1A02 451 518
1ja1A03 325 450
1ja1A04 519 676

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.50.360.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bvyF00 89.24 Bacillus megateriumBifunctional P-450/NADPH-P450 reductase 3.40.50.360 152 31 87 1.52 1.74
5nulA00 81.57 Clostridium beijerinckiiFlavodoxin 3.40.50.360 138 13 79 2.91 3.65
1e5dA01 81.04 Desulfovibrio gigasRubredoxin-oxygen oxidoreductase 3.40.50.360 143 10 83 2.94 3.54
2ohhA02 80.53 Type A flavoprotein fprAMethanothermobacter marburgensis str. Marburg 3.40.50.360 144 13 81 3.11 3.79
3gfsC00 79.24 Bacillus subtilisFMN-dependent NADPH-azoreductase 3.40.50.360 169 9 80 3.50 4.36
3d7nA00 77.97 Agrobacterium tumefaciens str. C58Flavodoxin, WrbA-like protein 3.40.50.360 153 15 82 3.96 4.80
1vmeA02 77.77 Thermotoga maritimaPutative uncharacterized protein 3.40.50.360 144 11 79 3.75 4.71
1rliD00 77.28 Bacillus subtilisPutative NAD(P)H-dependent FMN-containing oxidoreductase ywqN 3.40.50.360 168 8 76 3.82 4.98
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ja1A01
VKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEG
DPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQF
WPAVCEFFGVEA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ja1A01
VKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEG
DPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQF
WPAVCEFFGVEA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:55

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"