CATH Domain: 1j71A02 XML data for domain: 1j71A02

Molscript image for 1j71A02
1j71A02
PDB coordinates for domain 1j71A02

PDB 1j71, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.16
2.40.70.10.16.1
2.40.70.10.16.1.1
2.40.70.10.16.1.1.1
2.40.70.10.16.1.1.1.1

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Segment boundaries for domain 1j71A02

Chopping figure for domain 1j71A02
DomainStart PDB ResidueStop PDB Residue
1j71A01 1 173
1j71A02 174 334

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 2.40.70.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1t6eX02 79.31 Triticum aestivumXylanase inhibitor 2.40.70.10 187 9 82 3.80 4.61
1lyaB00 78.46 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 241 21 61 2.34 3.78
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1j71A02
GVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDSRNEIYRLPS
CDLSGDAVFNFDQGVKITVPLSELILKDSDSSICYFGISRNDANILGDNFLRRAYIVYDLDDKTISLAQVKYTSSSDISA
L
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1j71A02
GVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDSRNEIYRLPS
CDLSGDAVFNFDQGVKITVPLSELILKDSDSSICYFGISRNDANILGDNFLRRAYIVYDLDDKTISLAQVKYTSSSDISA
L
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:55

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"