CATH Domain: 1j5wA02 XML data for domain: 1j5wA02

Molscript image for 1j5wA02
1j5wA02
PDB coordinates for domain 1j5wA02

PDB 1j5w, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.58 Methane Monooxygenase Hydroxylase; Chain G, domain 1
1.20.58.180 Class II aaRS and biotin synthetases; domain 2 Gene3D
1.20.58.180.1
1.20.58.180.1.1
1.20.58.180.1.1.1
1.20.58.180.1.1.1.1
1.20.58.180.1.1.1.1.1

[top]
Segment boundaries for domain 1j5wA02

Chopping figure for domain 1j5wA02
DomainStart PDB ResidueStop PDB Residue
1j5wA01 2 204
1j5wA02 205 281

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 1.20.58.180.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1j1jA02 83.75 DNA recombinationNucleusTranslinHomo sapiens 1.20.58.200 85 6 84 3.10 3.66
3cp1A00 82.96 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 73 2 63 3.09 4.89
1p49A02 82.64 LysosomeSteryl-sulfataseMicrosomeSteryl-sulfatase [EC:3.1.6.2]Plasma membrane 1.10.287.550 59 8 63 2.57 4.07
2nr4A02 81.89 Hypothetical proteinMethanosarcina mazeiConserved protein 1.20.58.290 58 6 69 2.23 3.20
2imlA02 81.56 Hypothetical proteinArchaeoglobus fulgidusPutative uncharacterized protein 1.20.58.290 73 1 73 2.75 3.73
3bz1Z00 81.42 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 9 71 2.63 3.70
2i0mA01 81.12 Phosphate transport system proteinPhosphate transport system protein phoUStreptococcus pneumoniae 1.20.58.220 106 7 71 2.80 3.91
1t72D01 80.97 Phosphate transport system protein phoU homologPhosphate transport system proteinAquifex aeolicus 1.20.58.220 100 6 73 2.56 3.51
1sumB02 80.08 Thermotoga maritimaPhosphate transport system proteinPhosphate transport system protein phoU homolog 2 1.20.58.220 117 5 64 3.09 4.76
1h6gA02 79.48 Pathways in cancerCatenin complexEndometrial cancerCatenin (cadherin-associated protein), alphaLeukocyte transendothelial migration 1.20.120.230 121 2 62 2.84 4.52
2rldB00 78.60 Bacteroides thetaiotaomicronPutative uncharacterized protein 1.20.1440.60 104 3 56 2.53 4.46
3eamA02 78.25 Glr4197 proteinGloeobacter violaceus 1.20.58.390 119 3 61 2.25 3.67
1b04A03 77.99 Geobacillus stearothermophilusDNA ligase 1.10.287.610 62 11 64 3.08 4.78
1uurA01 77.06 Specific transcriptional repressor activityProtein homodimerization activityTranscription activator activityNucleusSignal transducer and activator of transcription A 1.20.58.240 110 9 66 3.19 4.81
1x9bA00 76.84 Hypothetical membrane proteinThermoplasma acidophilum 1.20.58.290 53 1 60 2.83 4.68
2i0mA02 76.00 Phosphate transport system proteinPhosphate transport system protein phoUStreptococcus pneumoniae 1.20.58.220 101 9 73 3.66 5.00
1sumB01 74.16 Thermotoga maritimaPhosphate transport system proteinPhosphate transport system protein phoU homolog 2 1.20.58.220 107 10 42 1.70 4.04
[1]
Displaying entries 1 to 17 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1j5wA02
NVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAARKAARVFLEVQAN
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1j5wA02
NVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAXARKAARVFLEVQANENS
PA
BLAST against CATH

[top]
Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Flow stage update by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Insertion by auto on 05 Mar 2006 16:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"