CATH Domain: 1j34B00 XML data for domain: 1j34B00

Molscript image for 1j34B00
1j34B00
PDB coordinates for domain 1j34B00

PDB 1j34, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.11
3.10.100.10.11.1
3.10.100.10.11.1.1
3.10.100.10.11.1.1.1
3.10.100.10.11.1.1.1.1

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Segment boundaries for domain 1j34B00

Chopping figure for domain 1j34B00
DomainStart PDB ResidueStop PDB Residue
1j34B00 201 323

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.10.100.10.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1eggA00 85.46 Macrophage mannose receptor 1Mannose bindingIntegral to plasma membraneReceptor activityReceptor-mediated endocytosis 3.10.100.10 132 23 90 4.50 4.95
1rjhA00 81.42 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 18 76 3.10 4.06
1cwvA05 79.38 InvasinYersinia pseudotuberculosis 3.10.100.10 100 5 70 2.56 3.62
1f00I03 79.03 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 3.10.100.10 98 16 70 2.88 4.07
2pf5D00 75.68 Cell-cell signalingHyaluronic acid bindingHomo sapiensTumor necrosis factor-inducible gene 6 proteinSignal transduction 3.10.100.10 91 12 60 2.96 4.85
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1j34B00
DCPSDWSSYEGHCYKPFSEPKNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFGHSIFWMGLSNVWNQCNWQWS
NAAMLRYKAWAEESYCVYFKSTNNKWRSRACRMMAQFVCEFQA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1j34B00
DCPSDWSSYEGHCYKPFSEPKNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFGHSIFWMGLSNVWNQCNWQWS
NAAMLRYKAWAEESYCVYFKSTNNKWRSRACRMMAQFVCEFQA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"