CATH Domain: 1j30A00 XML data for domain: 1j30A00

Molscript image for 1j30A00
1j30A00
PDB coordinates for domain 1j30A00

PDB 1j30, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.1260 Ferritin;
1.20.1260.10 Gene3D
1.20.1260.10.16
1.20.1260.10.16.1
1.20.1260.10.16.1.1
1.20.1260.10.16.1.1.1
1.20.1260.10.16.1.1.1.1

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Segment boundaries for domain 1j30A00

Chopping figure for domain 1j30A00
DomainStart PDB ResidueStop PDB Residue
1j30A00 3 143

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 1.20.1260.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nkdA00 75.45 Regulatory protein ropEscherichia coli 1.10.287.230 59 11 40 1.69 4.18
1lrzA03 74.76 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 1.20.58.90 62 3 38 1.22 3.19
1bsmA01 73.78 Superoxide dismutase [Mn/Fe]Propionibacterium freudenreichii subsp. shermanii 1.10.287.990 64 10 44 2.04 4.57
2rklB00 73.64 Multivesicular bodyVacuolar protein sorting-associated protein VTA1Membrane fractionProtein bindingEndocytosis 1.20.5.420 50 10 35 1.25 3.52
1jm0A00 73.58 1.20.5.420 48 18 34 0.93 2.73
3csxB00 73.26 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 71 4 46 2.30 4.91
3csxA00 73.14 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 6 41 2.03 4.85
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1j30A00
DLKGTKTAENLKQGFIGESMANRRYLYFAKRADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIGTLE
QMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1j30A00
MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIGT
LEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:43

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"