CATH Domain: 1j2jB00 XML data for domain: 1j2jB00

Molscript image for 1j2jB00
1j2jB00
PDB coordinates for domain 1j2jB00

PDB 1j2j, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.170 Gene3D
1.20.5.170.4
1.20.5.170.4.1
1.20.5.170.4.1.1
1.20.5.170.4.1.1.1
1.20.5.170.4.1.1.1.1

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Segment boundaries for domain 1j2jB00

Chopping figure for domain 1j2jB00
DomainStart PDB ResidueStop PDB Residue
1j2jB00 168 208

Structural Neighbourhood (24 entries)

There are 24 matching structural neighberhood comparisons for CATH ID 1.20.5.170.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 24 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nafA01 89.37 ADP-ribosylation factor-binding protein GGA1Homo sapiensProtein bindingIntracellular protein transport 1.20.5.170 36 97 87 1.30 1.48
2e5yA02 84.48 ATP synthase epsilon chainBacillus sp. PS3 1.20.5.440 45 7 82 2.55 3.10
2wwwC01 84.39 Methylmalonic aciduria type A protein, mitochondrialHomo sapiensLAO/AO transport system kinase [EC:2.7.-.-] 1.20.5.170 52 14 78 2.82 3.58
1jm0A00 83.78 1.20.5.420 48 9 83 3.89 4.67
4hb1A00 83.08 1.20.5.420 44 17 81 2.75 3.36
2f93B00 81.40 Sensory rhodopsin II transducerNatronomonas pharaonisProtein binding 1.10.287.470 51 4 74 3.34 4.48
2jdiH02 80.76 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 1.20.5.440 42 4 80 3.38 4.18
2hr3A01 80.53 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 10 60 2.02 3.31
2otkE00 80.12 1.20.5.420 43 7 76 2.43 3.17
2rklB00 79.19 Multivesicular bodyVacuolar protein sorting-associated protein VTA1Membrane fractionProtein bindingEndocytosis 1.20.5.420 50 9 74 2.94 3.97
1ozhA03 78.95 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 8 58 2.16 3.69
1a2xB00 78.55 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 0 48 0.56 1.15
2r44A01 78.32 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 7 48 0.42 0.86
2gm6A01 78.29 Ralstonia eutropha JMP134Cysteine dioxygenase type I 1.20.5.440 38 13 92 3.82 4.12
1r8eA03 77.57 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 9 52 1.16 2.22
1ltsC00 77.56 Heat-labile enterotoxin A chainEscherichia coli 1.20.5.240 41 2 51 0.99 1.93
2oarE02 77.01 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 4 48 1.49 3.05
1avyB00 76.31 Enterobacteria phage T4Fibritin 1.20.5.320 54 4 44 1.36 3.06
2oarA02 76.03 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 11 41 0.50 1.21
3c8vA04 75.01 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 26 46 0.92 1.99
1lp1B00 72.55 Staphylococcus aureusImmunoglobulin G-binding protein A 1.20.5.420 54 7 64 3.18 4.91
1s3jB01 72.39 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 6 48 2.00 4.10
1d66B02 66.64 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 6 36 1.44 3.94
1mkmA02 66.51 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 34 1.66 4.86
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Displaying entries 1 to 24 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1j2jB00
IFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1j2jB00
NVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"