CATH Domain: 1j2fA00 XML data for domain: 1j2fA00

Molscript image for 1j2fA00
1j2fA00
PDB coordinates for domain 1j2fA00

PDB 1j2f, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.200 Tumour Suppressor Smad4
2.60.200.10 Gene3D
2.60.200.10.2
2.60.200.10.2.1
2.60.200.10.2.1.1
2.60.200.10.2.1.1.5
2.60.200.10.2.1.1.5.1

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Segment boundaries for domain 1j2fA00

Chopping figure for domain 1j2fA00
DomainStart PDB ResidueStop PDB Residue
1j2fA00 190 422

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 2.60.200.10.2.1.1.5.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1zoqA00 88.57 Transcription from RNA polymerase II promoterCytosolic DNA-sensing pathwayRIG-I-like receptor signaling pathwayInterferon regulatory factor 3Interferon regulatory factor 3 2.60.200.10 191 95 80 3.61 4.47
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1j2fA00
NPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWR
AGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1j2fA00
NPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLG
GGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVG
ESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:15

Assigning to "2.60.200.10" based on similarity with "1qwtA00" (NWSI: 100, NWO: 99.581589958159, SPS: 95.08, SPO: 94, RMSD: 0.73)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1j2fA00"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1j2fA00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1j2fA00"

Insertion by auto on 08 Mar 2006 20:33

Final ChopClose added based on similarity with "1qwtA" [LEE: 0, LME: 0, MR: 5, LG: 7, SS: 95.08, SI: 99.2156862745098, SO: 98.8372093023256]