CATH Domain: 1j0pA00 XML data for domain: 1j0pA00

Molscript image for 1j0pA00
1j0pA00
PDB coordinates for domain 1j0pA00

PDB 1j0p, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.10 Cytochrome C3
3.90.10.10 Cytochrome C3 Gene3D
3.90.10.10.1
3.90.10.10.1.1
3.90.10.10.1.1.1
3.90.10.10.1.1.1.1
3.90.10.10.1.1.1.1.1

[top]
Segment boundaries for domain 1j0pA00

Chopping figure for domain 1j0pA00
DomainStart PDB ResidueStop PDB Residue
1j0pA00 0 107

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.90.10.10.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1up9A00 91.53 Cytochrome c3Desulfovibrio desulfuricans 3.90.10.10 107 39 98 1.48 1.51
1czjA00 85.82 Desulfomicrobium norvegicumCytochrome c3, 26 kDa 3.90.10.10 110 30 91 2.71 2.95
2cy3A00 84.78 Desulfomicrobium norvegicumCytochrome c3, 13 kDa 3.90.10.10 118 28 81 2.72 3.34
1gyoA00 84.57 Desulfovibrio gigasCytochrome C3=26 kDa subunit of A dimeric class III C-type cytochrome 3.90.10.10 106 29 89 3.18 3.54
2bq4A00 83.88 Basic cytochrome c3Desulfovibrio africanus 3.90.10.10 114 33 86 3.15 3.63
3caoA00 77.07 Acidic cytochrome c3Desulfovibrio africanus 3.90.10.10 102 24 76 3.27 4.25
1h29B04 76.14 Desulfovibrio vulgaris str. HildenboroughHigh-molecular-weight cytochrome c 3.90.10.10 116 20 77 3.58 4.61
3bxuA00 75.61 Cytochrome c3Geobacter sulfurreducens 3.90.10.10 71 30 62 2.57 4.08
[1]
Displaying entries 1 to 8 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1j0pA00
AAPKAPADGLKMDKTKQPVVFNHSTHKAVKCGDCHHPVNGKEDLQKCATAGCHDNMDKKDKSAKGYYHAMHDKGTKFKSC
VGCHLETAGADAAKKKELTGCKGSKCHS
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1j0pA00
AAPKAPADGLKMDKTKQPVVFNHSTHKAVKCGDCHHPVNGKEDLQKCATAGCHDNMDKKDKSAKGYYHAMHDKGTKFKSC
VGCHLETAGADAAKKKELTGCKGSKCHS
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:55

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"