CATH Domain: 1j0aA02 XML data for domain: 1j0aA02

Molscript image for 1j0aA02
1j0aA02
PDB coordinates for domain 1j0aA02

PDB 1j0a, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1100 Gene3D
3.40.50.1100.12
3.40.50.1100.12.1
3.40.50.1100.12.1.1
3.40.50.1100.12.1.1.1
3.40.50.1100.12.1.1.1.1

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Segment boundaries for domain 1j0aA02

Chopping figure for domain 1j0aA02
DomainStart PDB ResidueStop PDB Residue
1j0aA01 1 52
1j0aA01 158 325
1j0aA02 53 156

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 3.40.50.1100.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1p5jA02 86.13 Protein homodimerization activityL-serine ammonia-lyase activityGlycine, serine and threonine metabolismPyruvate biosynthetic processMetabolic pathways 3.40.50.1100 96 22 91 2.10 2.30
1m1nB03 80.23 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 106 4 67 2.39 3.52
1e0tA01 80.08 Purine metabolismPyruvate metabolismMetabolic pathwaysGlycolysis / GluconeogenesisMembrane 3.40.1380.20 123 6 78 2.99 3.79
1mioB04 79.66 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 8 69 2.69 3.89
2pjuA02 75.61 Positive regulation of gene-specific transcriptionPropionate catabolism operon regulatory proteinNegative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activity 3.40.50.10660 88 7 66 3.23 4.87
1a3wA01 75.45 Purine metabolismPyruvate metabolismPyruvate kinase [EC:2.7.1.40]GlycolysisPyruvate metabolic process 3.40.1380.20 155 12 62 3.11 4.97
2iksA01 75.09 LacI family transcriptional regulator, fructose operon transcriptional repressorFructose repressorEscherichia coli K-12 3.40.50.2300 95 7 57 2.83 4.91
1g7sA03 74.21 Methanothermobacter thermautotrophicus str. Delta HTranslation initiation factor IF-2 unclassified subunitProbable translation initiation factor IF-2 3.40.50.10050 81 4 54 2.64 4.82
2q5cA02 73.99 Clostridium acetobutylicumNtrC family transcriptional regulator (PAS and AAA domains) 3.40.50.10660 89 7 68 2.88 4.22
3cs3A02 73.88 Sugar-binding transcriptional regulator, LacI familyLacI family transcriptional regulatorEnterococcus faecalis 3.40.50.2300 135 6 56 2.60 4.62
1bykA02 72.70 Specific transcriptional repressor activityLacI family transcriptional regulator, trehalose operon repressorSequence-specific DNA binding transcription factor activityTranscriptionHTH-type transcriptional regulator treR 3.40.50.2300 117 6 60 2.64 4.35
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1j0aA02
NKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFE
LMKYAEEIAEELKREGRKPYVIPP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1j0aA02
NKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFE
LMKYAEEIAEELKREGRKPYVIPP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:53

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"