CATH Domain: 1j09A05 XML data for domain: 1j09A05

Molscript image for 1j09A05
1j09A05
PDB coordinates for domain 1j09A05

PDB 1j09, Chain A, Domain 5

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.350 Gene3D
1.10.10.350.1
1.10.10.350.1.1
1.10.10.350.1.1.1
1.10.10.350.1.1.1.1
1.10.10.350.1.1.1.1.1

[top]
Segment boundaries for domain 1j09A05

Chopping figure for domain 1j09A05
DomainStart PDB ResidueStop PDB Residue
1j09A01 1 70
1j09A01 187 237
1j09A02 238 322
1j09A03 71 186
1j09A04 323 370
1j09A05 371 468

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 1.10.10.350.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1irxA05 84.04 Aminoacyl-tRNA biosynthesisLysyl-tRNA synthetase, class I [EC:6.1.1.6]Pyrococcus horikoshiiLysyl-tRNA synthetase 1.10.10.350 93 20 92 3.36 3.62
[1]
Displaying entries 1 to 1 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1j09A05
YLFTEDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEI
LALLGKERALRRLERALA
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1j09A05
YLFTEDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEI
LALLGKERALRRLERALA
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:53

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"