CATH Domain: 1ixrB03 XML data for domain: 1ixrB03

Molscript image for 1ixrB03
1ixrB03
PDB coordinates for domain 1ixrB03

PDB 1ixr, Chain B, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.10 DNA helicase RuvA subunit, C-terminal domain Gene3D
1.10.8.10.13
1.10.8.10.13.1
1.10.8.10.13.1.1
1.10.8.10.13.1.1.1
1.10.8.10.13.1.1.1.1

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Segment boundaries for domain 1ixrB03

Chopping figure for domain 1ixrB03
DomainStart PDB ResidueStop PDB Residue
1ixrB01 1 63
1ixrB02 64 138
1ixrB03 139 191

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 1.10.8.10.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bvsF03 88.26 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.8.10 45 26 84 1.35 1.59
1otrA00 83.38 Saccharomyces cerevisiaeProtein bindingUbiquitin-binding protein CUE2 1.10.8.10 49 8 75 2.54 3.37
1dv0A00 83.10 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 45 24 71 1.92 2.68
1tteA02 82.34 Ubiquitin-conjugating enzyme E2-24 kDaIdentical protein bindingProtein polyubiquitinationUbiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:6.3.2.19]Ubiquitin mediated proteolysis 1.10.8.10 57 11 85 3.31 3.85
1lp1B00 81.06 Staphylococcus aureusImmunoglobulin G-binding protein A 1.20.5.420 54 13 85 3.81 4.47
1djxB01 81.04 Calcium ion bindingCalcium signaling pathwayPhosphatidylinositol signaling systemRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 52 13 94 3.71 3.93
1xvhA02 80.65 Extracellular matrix-binding protein ebhStaphylococcus aureus subsp. aureus MW2 1.20.5.420 55 16 90 4.05 4.46
1okkD01 79.93 Cell division protein ftsYThermus aquaticusProtein binding 1.20.120.140 58 22 89 3.32 3.70
1s26D01 79.66 Calcium signaling pathwayPhosphatidylinositol signaling systemOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 59 11 86 3.88 4.49
1njgA02 78.34 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 7 59 2.23 3.77
1kyqA03 76.46 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processPrecorrin-2 dehydrogenase activityMetabolic pathways 1.10.3280.10 82 5 63 3.06 4.83
1sxjE02 75.75 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 3 78 3.53 4.52
1rj9A01 74.85 Cell division protein ftsYThermus aquaticusProtein binding 1.20.120.140 81 18 58 2.84 4.89
3bosA02 74.68 DnaA-homolog proteinShewanella amazonensis SB2BRegulatory inactivation of DnaA Hda protein 1.10.8.60 59 11 64 3.04 4.72
1jr3D03 74.34 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 7 53 2.30 4.30
1sxjC02 71.53 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 7 59 2.83 4.76
1im2A02 66.80 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.10 40 12 41 1.95 4.70
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ixrB03
EKVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKRLR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ixrB03
EKVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKRLR
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:23

Cut based on decision in database "DomChop" on "cathdb"