CATH Domain: 1ixhA01 XML data for domain: 1ixhA01

Molscript image for 1ixhA01
1ixhA01
PDB coordinates for domain 1ixhA01

PDB 1ixh, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.1
3.40.190.10.1.1
3.40.190.10.1.1.1
3.40.190.10.1.1.1.1
3.40.190.10.1.1.1.1.1

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Segment boundaries for domain 1ixhA01

Chopping figure for domain 1ixhA01
DomainStart PDB ResidueStop PDB Residue
1ixhA01 1 77
1ixhA01 230 239
1ixhA01 254 321
1ixhA02 78 229
1ixhA02 240 253

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 3.40.190.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1pc3A01 88.38 Two-component systemABC transportersPhosphate-binding protein pstS 1Phosphate transport system substrate-binding proteinMycobacterium tuberculosis 3.40.190.10 141 26 88 1.62 1.83
1twyA01 83.16 Two-component systemABC transportersVibrio choleraePhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding protein 3.40.190.10 112 20 70 2.29 3.23
1atgA01 82.15 Azotobacter vinelandiiBinding protein 3.40.190.10 122 20 74 2.42 3.23
3gzgA01 80.69 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 18 73 2.52 3.43
3cvgA01 79.54 3.40.190.10 144 13 79 3.64 4.59
1xs5A01 78.77 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 2 77 3.11 4.02
3fzvD02 77.53 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 109 9 61 2.38 3.84
1i6aA01 77.31 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator 3.40.190.10 108 4 66 2.78 4.18
1ixcA02 75.91 LysR-type regulatory proteinCupriavidus necator 3.40.190.10 99 14 61 2.63 4.29
2ql3A01 74.72 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein 3.40.190.10 97 8 61 2.72 4.44
1lstA01 74.57 ABC transportersLysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding protein 3.40.190.10 137 10 74 3.48 4.69
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ixhA01
EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGAD
WSKTFAQSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWKTNIKDSSGKPLY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ixhA01
EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGAD
WSKTFAQSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWKTNIKDSSGKPLY
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1ixh001" to "1ixhA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:53

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"