CATH Domain: 1iv6A00 XML data for domain: 1iv6A00

Molscript image for 1iv6A00
1iv6A00
PDB coordinates for domain 1iv6A00

PDB 1iv6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.66
1.10.10.60.66.1
1.10.10.60.66.1.1
1.10.10.60.66.1.1.1
1.10.10.60.66.1.1.1.1

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Segment boundaries for domain 1iv6A00

Chopping figure for domain 1iv6A00
DomainStart PDB ResidueStop PDB Residue
1iv6A00 378 434

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 1.10.10.60.66.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2k9nA02 85.24 MYB24Trichomonas vaginalis 1.10.10.60 54 25 89 2.86 3.20
1irzA00 83.62 Regulation of anthocyanin metabolic processCytokinin mediated signaling pathwayNucleusSequence-specific DNA binding transcription factor activityArabidopsis thaliana 1.10.10.60 64 15 89 4.30 4.83
2dmqA01 82.69 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 5 85 3.46 4.02
1nk3P00 79.94 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 8 90 3.90 4.31
1o4xA02 79.43 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 3 87 3.95 4.50
1iufA02 74.88 Centromeric DNA bindingHistone modificationARS-binding protein 1Schizosaccharomyces pombeCondensed nuclear chromosome, centromeric region 1.10.10.60 64 5 73 3.47 4.73
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1iv6A00
RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1iv6A00
MTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"