CATH Domain: 1inlD01 XML data for domain: 1inlD01

Molscript image for 1inlD01
1inlD01
PDB coordinates for domain 1inlD01

PDB 1inl, Chain D, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.150 Vaccinia Virus protein VP39 Gene3D
3.40.50.150.4
3.40.50.150.4.1
3.40.50.150.4.1.1
3.40.50.150.4.1.1.1
3.40.50.150.4.1.1.1.2

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Segment boundaries for domain 1inlD01

Chopping figure for domain 1inlD01
DomainStart PDB ResidueStop PDB Residue
1inlD01 68 296
1inlD02 4 67

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 3.40.50.150.4.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2i7cB02 91.69 Arginine and proline metabolismGlutathione metabolismMetabolic pathwaysCysteine and methionine metabolismPlasmodium falciparum 3D7 3.40.50.150 222 38 95 1.49 1.57
1mjfA02 90.52 Pyrococcus furiosusArginine and proline metabolismProbable spermidine synthaseCysteine and methionine metabolismSpermidine synthase [EC:2.5.1.16] 3.40.50.150 219 34 94 1.50 1.58
1uirA02 89.10 Arginine and proline metabolismGlutathione metabolismMetabolic pathwaysCysteine and methionine metabolismBeta-Alanine metabolism 3.40.50.150 253 34 84 1.72 2.02
3c6kB03 83.26 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.40.50.150 187 19 77 3.30 4.25
1l3iA00 78.68 Methanothermobacter thermautotrophicus str. Delta HPorphyrin and chlorophyll metabolismProbable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]Precorrin-8W decarboxylase [EC:1.-.-.-]Metabolic pathways 3.40.50.150 178 8 72 3.39 4.70
3bxoA01 78.36 Streptomyces venezuelaeN,N-dimethyltransferase 3.40.50.150 177 11 70 2.86 4.07
2r3sA03 77.99 3.40.50.150 202 11 72 3.44 4.74
1dusA00 77.36 Methanocaldococcus jannaschiiProtein MJ0882 3.40.50.150 192 11 70 3.45 4.87
1m6yA01 77.17 Thermotoga maritimaS-adenosyl-methyltransferase [EC:2.1.1.-]S-adenosyl-L-methionine-dependent methyltransferase mraW 3.40.50.150 180 13 71 2.78 3.90
2qy6A01 77.08 Escherichia coli O157:H7TRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC 3.40.50.150 234 8 69 2.97 4.29
2b3tA02 76.97 Methyltransferase [EC:2.1.1.-]Protein methyltransferase hemKProtein bindingEscherichia coli K-12 3.40.50.150 192 9 72 3.63 5.00
1sqgA04 75.93 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.40.50.150 198 10 71 3.13 4.37
1vlmA00 74.98 Thermotoga maritimaPutative uncharacterized protein 3.40.50.150 202 9 68 3.28 4.79
3frhA02 74.18 16S rRNA methylaseEscherichia coli 3.40.50.150 183 7 65 3.15 4.82
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1inlD01
TTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAE
IVIANGAEYVRKFKNEFDVIIIDSFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTT
YPSGMWSYTFASKGIDPIKDFDPEKVRKFNKELKYYNEEVHVASFALPNFVKKELGLM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1inlD01
TTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAE
IVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP
ITRVYLGFMTTYPSGMWSYTFASKGIDPIKDFDPEKVRKFNKELKYYNEEVHVASFALPNFVKKELGLM
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:51

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"