CATH Domain: 1in4A03 XML data for domain: 1in4A03

Molscript image for 1in4A03
1in4A03
PDB coordinates for domain 1in4A03

PDB 1in4, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.3
1.10.8.60.3.1
1.10.8.60.3.1.1
1.10.8.60.3.1.1.1
1.10.8.60.3.1.1.1.1

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Segment boundaries for domain 1in4A03

Chopping figure for domain 1in4A03
DomainStart PDB ResidueStop PDB Residue
1in4A01 17 180
1in4A02 256 328
1in4A03 181 255

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 1.10.8.60.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1njgA02 90.82 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 16 86 1.89 2.18
2chgA02 90.65 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 15 86 1.62 1.87
1njgB01 89.85 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 73 15 86 2.15 2.48
1jr3D03 89.28 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 12 94 2.23 2.36
2z4sA02 88.83 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 6 96 2.51 2.61
1sxjC02 87.75 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 13 92 2.49 2.71
1sxjD02 86.85 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 17 92 1.93 2.10
1sxjE02 86.64 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 12 84 1.93 2.30
1jqjD03 86.61 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 86 12 83 4.13 4.93
1r6bX03 86.53 ATP-dependent Clp protease ATP-binding subunit clpAATP-dependent Clp protease ATP-binding subunit ClpAProtein bindingEscherichia coli K-12 1.10.8.60 88 13 84 3.10 3.69
1ny5B03 86.17 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 1.10.8.60 74 9 86 2.22 2.56
1fnnA01 85.44 Pyrobaculum aerophilumCell division control protein 6 (Cdc6), putativeArchaeal cell division control protein 6 1.10.8.60 101 20 71 1.78 2.50
2fnaA02 84.96 Sulfolobus solfataricusPutative uncharacterized protein 1.10.8.60 74 12 81 3.31 4.07
1e32A04 84.37 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 87 10 77 2.46 3.19
1qzmA00 83.30 Serine-type endopeptidase activityATP-dependent Lon protease [EC:3.4.21.53]ATP-dependent protease LaResponse to heatProteolysis 1.10.8.60 94 16 76 2.39 3.12
1im2A03 81.90 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.60 94 10 73 2.84 3.87
3bosA02 80.64 DnaA-homolog proteinShewanella amazonensis SB2BRegulatory inactivation of DnaA Hda protein 1.10.8.60 59 16 78 3.29 4.18
1w3dA00 78.12 Geobacillus stearothermophilusDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 4.10.320.10 45 6 57 2.53 4.41
1h3lB00 77.84 RNA polymerase sigma factorStreptomyces coelicolorRNA polymerase sigma-70 factor, ECF subfamily 1.10.1740.10 78 8 53 2.33 4.33
1w85I00 75.87 Geobacillus stearothermophilusDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 4.10.320.10 42 7 53 2.26 4.24
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Displaying entries 1 to 20 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1in4A03
TVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1in4A03
TVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:51

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"