CATH Domain: 1ikoP00 XML data for domain: 1ikoP00

Molscript image for 1ikoP00
1ikoP00
PDB coordinates for domain 1ikoP00

PDB 1iko, Chain P, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.420 Cupredoxins - blue copper proteins Gene3D
2.60.40.420.17
2.60.40.420.17.1
2.60.40.420.17.1.1
2.60.40.420.17.1.1.1
2.60.40.420.17.1.1.1.1

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Segment boundaries for domain 1ikoP00

Chopping figure for domain 1ikoP00
DomainStart PDB ResidueStop PDB Residue
1ikoP00 30 170

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.60.40.420.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1shxA00 87.19 Mus musculusEphrin-A5Retinal ganglion cell axon guidanceChemorepellent activity 2.60.40.420 138 28 91 2.95 3.22
1ws8A00 79.10 MavicyaninCucurbita pepo 2.60.40.420 104 17 70 3.20 4.56
1jerA00 77.47 Cucumis sativusCucumber peeling cupredoxin 2.60.40.420 110 15 69 3.09 4.45
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ikoP00
SIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQ
DVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ikoP00
SIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQ
DVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:02

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"