CATH Domain: 1ik7A00 XML data for domain: 1ik7A00

Molscript image for 1ik7A00
1ik7A00
PDB coordinates for domain 1ik7A00

PDB 1ik7, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.530 Single helix bin Gene3D
1.20.5.530.1
1.20.5.530.1.1
1.20.5.530.1.1.1
1.20.5.530.1.1.1.1
1.20.5.530.1.1.1.1.1

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Segment boundaries for domain 1ik7A00

Chopping figure for domain 1ik7A00
DomainStart PDB ResidueStop PDB Residue
1ik7A00 78 129

Structural Neighbourhood (35 entries)

There are 35 matching structural neighberhood comparisons for CATH ID 1.20.5.530.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 35 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3gwoA00 89.64 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 3 96 1.92 2.00
1ybkA00 87.99 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 9 86 2.20 2.54
1ezjA02 87.15 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 1 88 2.65 3.00
3e7kA00 84.73 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 3 72 2.09 2.89
1u57A00 84.35 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 4 84 2.76 3.26
1llmD02 84.17 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 9 83 3.88 4.64
1l2pA00 83.44 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 5 81 3.45 4.21
2dw3A01 83.31 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 9 81 3.59 4.39
1uixA00 82.92 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 5 67 2.45 3.62
1pl5A00 82.84 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 1 64 1.45 2.27
1kilE00 82.05 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 63 1.92 3.03
2w83C00 81.75 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 3 56 1.22 2.15
1vf5C03 81.02 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 9 61 1.63 2.65
2k1aA00 80.39 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 2 67 3.21 4.77
2b9bA04 80.01 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 1 69 3.23 4.66
2r9iA00 79.67 Putative phage capsid proteinCorynebacterium diphtheriae 1.10.287.80 69 63 56 1.98 3.50
1mg1A03 79.56 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 1 51 1.22 2.38
1favA00 79.36 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 9 56 1.91 3.39
2dw4A03 78.76 Lysine-specific histone demethylase 1AHistone demethylase activityNucleusTranscription repressor activityHomo sapiens 1.10.287.80 101 7 51 1.81 3.52
2v4hB00 78.55 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 5 57 2.22 3.88
2spcA00 77.99 Oocyte constructionSpectrosome organizationPlasma membrane organizationNegative regulation of microtubule depolymerizationGermarium-derived female germ-line cyst formation 1.20.58.60 107 5 48 1.53 3.15
1dkgA01 77.99 Protein grpEResponse to heatMolecular chaperone GrpEEscherichia coli K-12 3.90.20.20 98 9 53 1.79 3.37
1kv4A00 77.84 Moricin-1Bombyx mori 1.20.5.750 42 4 53 1.80 3.34
2wpqA00 77.66 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 0 52 2.23 4.25
1t6aA01 77.08 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 4 50 1.51 3.02
1xrdA01 75.67 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 6 55 2.31 4.14
1ozhA03 75.49 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 12 46 1.74 3.77
3b4sA02 73.68 Vibrio parahaemolyticusLuxT 1.20.5.830 41 7 42 1.90 4.49
3fx7A00 73.17 Helicobacter pyloriPutative uncharacterized protein 1.10.287.850 83 3 36 0.77 2.13
1htmD00 73.07 HemagglutininInfluenza A virus (A/Aichi/2/1968(H3N2)) 3.90.20.10 123 7 39 1.61 4.13
3bz1H01 73.01 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 51 0 42 1.66 3.92
1wa9B03 71.33 Regulation of circadian sleep/wake cycle, sleepPeriod circadian proteinNucleusResponse to temperature stimulusNegative regulation of transcription from RNA polymerase II promoter 1.20.5.770 33 6 40 1.44 3.57
2qfaA00 69.83 Baculoviral IAP repeat-containing protein 5Zinc ion bindingPositive regulation of mitotic cell cycleCaspase inhibitor activityMitosis 1.10.1170.10 134 5 32 1.55 4.83
1d66B02 66.27 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 6 28 0.37 1.28
1mkmA02 62.89 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 14 26 0.62 2.30
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Displaying entries 1 to 35 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ik7A00
RGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ik7A00
RGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Flow stage update by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Insertion by auto on 05 Mar 2006 16:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"