CATH Domain: 1iirA02 XML data for domain: 1iirA02

Molscript image for 1iirA02
1iirA02
PDB coordinates for domain 1iirA02

PDB 1iir, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.2000 Glycogen Phosphorylase B; Gene3D
3.40.50.2000.13
3.40.50.2000.13.1
3.40.50.2000.13.1.1
3.40.50.2000.13.1.1.1
3.40.50.2000.13.1.1.1.1

[top]
Segment boundaries for domain 1iirA02

Chopping figure for domain 1iirA02
DomainStart PDB ResidueStop PDB Residue
1iirA01 1 218
1iirA01 383 401
1iirA02 219 382

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.50.2000.13.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1pswA02 78.08 Lipopolysaccharide biosynthesisMetabolic pathwaysADP-heptose--LPS heptosyltransferase 2Heptosyltransferase II [EC:2.4.-.-]Escherichia coli K-12 3.40.50.2000 174 14 80 4.02 5.00
2qr3A00 74.57 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 13 68 3.33 4.87
[1]
Displaying entries 1 to 2 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1iirA02
ILPDERPLSPELAAFLDAGPPPVYLGFGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGR
VAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGT
I
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1iirA02
ILPDERPLSPELAAFLDAGPPPVYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVL
FGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAV
AGTI
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:51

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"