CATH Domain: 1iibA00 XML data for domain: 1iibA00

Molscript image for 1iibA00
1iibA00
PDB coordinates for domain 1iibA00

PDB 1iib, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.270 Gene3D
3.40.50.270.4
3.40.50.270.4.1
3.40.50.270.4.1.1
3.40.50.270.4.1.1.1
3.40.50.270.4.1.1.1.1

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Segment boundaries for domain 1iibA00

Chopping figure for domain 1iibA00
DomainStart PDB ResidueStop PDB Residue
1iibA00 3 105

Structural Neighbourhood (72 entries)

There are 72 matching structural neighberhood comparisons for CATH ID 3.40.50.270.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 72 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2q5cA01 83.09 Clostridium acetobutylicumNtrC family transcriptional regulator (PAS and AAA domains) 3.40.50.2300 97 15 86 2.74 3.17
1vrvA00 83.00 Phosphotransferase system (PTS)Fructose and mannose metabolismPTS system, mannitol-specific IIC componentPTS system, mannitol-specific IIA component [EC:2.7.1.69]PTS system, mannitol-specific IIB component [EC:2.7.1.69] 3.40.50.10370 96 10 90 3.42 3.79
1ys7A01 82.27 Transcriptional regulatory protein prrAMycobacterium tuberculosis 3.40.50.2300 122 9 76 2.58 3.38
2qsjB00 82.07 DNA-binding response regulator, LuxR familyRuegeria pomeroyi 3.40.50.2300 122 11 80 3.24 4.03
2zayA00 81.85 Response regulator receiver proteinDesulfuromonas acetoxidans DSM 684 3.40.50.2300 123 9 78 2.82 3.61
2qxyA00 81.62 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulator 3.40.50.2300 118 8 78 2.61 3.31
1dbwB00 80.77 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 11 77 3.00 3.87
2pjuC01 80.58 Positive regulation of gene-specific transcriptionPropionate catabolism operon regulatory proteinNegative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activity 3.40.50.2300 100 12 87 3.60 4.12
1zgzA00 80.48 Two-component systemTorCAD operon transcriptional regulatory protein torRTwo-component system, OmpR family, torCAD operon response regulator TorRProtein bindingEscherichia coli K-12 3.40.50.2300 118 11 78 3.27 4.15
2jbaA00 80.43 Two-component systemPhosphate regulon transcriptional regulatory protein phoBTwo-component system, OmpR family, phosphate regulon response regulator PhoBProtein bindingEscherichia coli K-12 3.40.50.2300 125 8 77 3.01 3.88
2qr3A00 80.42 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 10 78 2.98 3.77
3eq2B01 80.28 Pseudomonas aeruginosaProbable two-component response regulator 3.40.50.2300 103 9 75 2.54 3.35
1mb3A00 80.22 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 11 80 3.27 4.09
2b4aA00 80.16 BH3024 proteinBacillus halodurans 3.40.50.2300 116 6 81 3.41 4.21
2qzjA00 80.08 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 9 77 3.11 4.02
3b2nA00 80.04 Similar to two-component response regulatorStaphylococcus aureus subsp. aureus Mu50 3.40.50.2300 119 12 74 2.42 3.24
2rdmA00 79.85 Response regulator receiver proteinSinorhizobium medicae WSM419 3.40.50.2300 117 14 81 3.23 3.98
3gl9B00 79.80 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulatorProtein binding 3.40.50.2300 118 10 78 3.46 4.39
3cnbA00 79.70 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 14 74 3.13 4.22
2qu7A01 79.65 Putative transcriptional regulatorStaphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3.40.50.2300 129 11 76 3.25 4.23
3cg4A00 79.49 Response regulator receiver domain protein (CheY-like)Methanospirillum hungatei JF-1 3.40.50.2300 115 7 75 2.79 3.69
2r4qA00 79.32 PTS system fructose-specific EIIABC componentPTS system, fructose-specific IIB component [EC:2.7.1.69]Bacillus subtilisFructose and mannose metabolismPTS system, fructose-specific IIA component [EC:2.7.1.69] 3.40.50.2300 98 11 87 4.33 4.96
3gt7A00 79.27 Sensor proteinSyntrophus aciditrophicus SB 3.40.50.2300 131 8 74 2.83 3.82
1p2fA01 79.09 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 3.40.50.2300 117 13 80 3.63 4.52
2driA01 78.92 Bacterial chemotaxisABC transportersD-ribose-binding periplasmic proteinRibose transport system substrate-binding proteinMembrane 3.40.50.2300 125 14 76 3.26 4.24
2rjnA00 78.45 Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomainNeptuniibacter caesariensis 3.40.50.2300 135 14 71 2.65 3.69
1w25B02 78.44 Two-component systemCell cycle - CaulobacterCaulobacter vibrioidesIdentical protein bindingTwo-component system, cell cycle response regulator 3.40.50.2300 143 7 67 2.46 3.66
3cu5B00 78.36 Clostridium phytofermentans ISDgTwo component transcriptional regulator, AraC family 3.40.50.2300 129 11 77 3.17 4.09
1qkkA00 78.34 Sinorhizobium melilotiTwo-component systemTwo-component system, NtrC family, C4-dicarboxylate transport response regulator DctDC4-dicarboxylate transport transcriptional regulatory protein dctD 3.40.50.2300 139 10 69 3.11 4.50
1jbeA00 78.29 Bacterial chemotaxisTwo-component systemEscherichia coli O157:H7Two-component system, chemotaxis family, response regulator CheYChemotaxis protein cheY 3.40.50.2300 125 8 78 3.13 3.99
2jk1A00 78.23 Hydrogenase transcriptional regulatory protein hupR1Rhodobacter capsulatus 3.40.50.2300 138 12 68 2.83 4.11
1npyA01 78.03 Shikimate 5-dehydrogenase [EC:1.1.1.25]Haemophilus influenzaePhenylalanine, tyrosine and tryptophan biosynthesisShikimate 5-dehydrogenase-like protein HI_0607Metabolic pathways 3.40.192.10 100 5 70 3.27 4.61
1a04A01 78.03 Two-component systemTwo-component system, NarL family, nitrate/nitrite response regulator NarLProtein bindingEscherichia coli K-12Nitrate/nitrite response regulator protein narL 3.40.50.2300 124 14 77 3.15 4.07
1kgdA01 77.90 Actin cytoskeletonGuanylate kinase activityPeripheral plasma membrane protein CASKCell adhesionHomo sapiens 3.40.50.300 115 7 77 3.31 4.28
1ny5A01 77.82 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 3.40.50.2300 136 16 70 3.04 4.31
3cz5B00 77.77 Two-component response regulator, LuxR familyAurantimonas manganoxydans SI85-9A1 3.40.50.2300 140 10 70 3.41 4.87
1a2oA01 77.64 Bacterial chemotaxisTwo-component systemChemotaxis response regulator protein-glutamate methylesteraseTwo-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]Salmonella enterica subsp. enterica serovar Typhimurium 3.40.50.2300 133 12 72 2.65 3.67
2g76A01 77.25 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseGlycine, serine and threonine metabolismBrain developmentMetabolic pathways 3.40.50.720 112 6 78 3.41 4.34
3d8uB01 77.18 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 119 16 82 3.97 4.82
2eklA01 77.16 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]Sulfolobus tokodaiiGlycine, serine and threonine metabolismMetabolic pathways313aa long hypothetical D-3-phosphoglycerate dehydrogenase 3.40.50.720 121 4 76 3.75 4.93
1i2aA02 76.88 Methanocaldococcus jannaschii50S ribosomal protein L1P 3.40.50.790 91 4 75 3.05 4.03
1qo0D01 76.82 Pseudomonas aeruginosaAliphatic amidase regulator 3.40.50.2300 127 11 75 3.02 4.00
3l84A03 76.79 TransketolasePentose phosphate pathwayCampylobacter jejuniTransketolase [EC:2.2.1.1]Metabolic pathways 3.40.50.920 116 6 68 3.26 4.79
1mzpA02 76.58 Sulfolobus acidocaldariusRibosomeLarge subunit ribosomal protein L150S ribosomal protein L1P 3.40.50.790 90 8 75 3.12 4.12
2qv0A00 76.55 Protein mrkEKlebsiella pneumoniae 3.40.50.2300 122 8 78 3.76 4.78
1dcfA00 76.42 Response to insectResponse to abscisic acid stimulusResponse to heatResponse to gibberellin stimulusDefense response to bacterium 3.40.50.2300 133 6 71 3.00 4.20
1eiwA00 76.39 Methanothermobacter thermautotrophicus str. Delta HProtein MTH_538 3.40.50.9200 111 9 75 3.29 4.35
1k68A00 76.19 Tolypothrix sp. PCC 7601Response regulator 3.40.50.2300 139 18 71 3.35 4.70
2dwuA02 76.15 D-Glutamine and D-glutamate metabolismMetabolic pathwaysBacillus anthracisGlutamate racemaseGlutamate racemase [EC:5.1.1.3] 3.40.50.1860 113 8 63 2.45 3.85
3eagA01 75.97 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]Neisseria meningitidis serogroup BUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3.40.50.720 88 12 63 2.84 4.50
1zuwB01 75.94 D-Glutamine and D-glutamate metabolismBacillus subtilisGlutamate racemase [EC:5.1.1.3]Glutamate racemase 1Metabolic pathways 3.40.50.1860 143 10 60 2.80 4.60
2x5oA01 75.93 D-Glutamine and D-glutamate metabolismPeptidoglycan biosynthesisMetabolic pathwaysUDP-N-acetylmuramoylalanine--D-glutamate ligaseUDP-N-acetylmuramoylalanine-D-glutamate ligase activity 3.40.50.720 92 10 64 3.14 4.90
1p3dA01 75.91 D-Glutamine and D-glutamate metabolismUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Haemophilus influenzaePeptidoglycan biosynthesis 3.40.50.720 87 16 66 3.28 4.97
2qvgA00 75.68 Two component response regulator[EC:2.7.3.-]Legionella pneumophila subsp. pneumophila str. Philadelphia 1 3.40.50.2300 126 13 75 3.62 4.80
1z0sA01 75.42 Archaeoglobus fulgidusProbable inorganic polyphosphate/ATP-NAD kinaseNAD+ kinase [EC:2.7.1.23]Nicotinate and nicotinamide metabolismMetabolic pathways 3.40.50.10330 123 11 73 3.34 4.51
1mx3A01 75.42 Protein domain specific bindingTranscription factor bindingProtein C-terminus bindingViral genome replicationC-terminal-binding protein 1 3.40.50.720 132 7 69 3.37 4.84
2gfqA02 75.24 Hypothetical proteinPyrococcus horikoshiiD-tyrosyl-tRNA(Tyr) deacylase 3.40.50.10700 87 3 68 3.34 4.85
1s8nA01 75.23 Response regulator NasTProbable transcriptional regulatory protein pdtaRMycobacterium tuberculosis 3.40.50.2300 132 9 68 3.22 4.72
2ayzA00 75.15 Two-component systemTwo-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]Sensor kinase protein rcsCEscherichia coli K-12 3.40.50.2300 133 14 72 2.73 3.78
1xrsB02 75.15 Clostridium sticklandiiD-lysine 5,6-aminomutase beta subunitProtein binding 3.40.50.280 160 11 61 2.95 4.82
3bblA01 74.74 Chloroflexus aggregans DSM 9485LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupGTranscriptional regulator, LacI family 3.40.50.2300 136 12 72 3.46 4.80
1kjwA02 74.71 Postsynaptic membraneRattus norvegicusProtein C-terminus bindingIonotropic glutamate receptor bindingDisks large homolog 4 3.40.50.300 121 4 69 3.39 4.88
1reqA02 74.44 Propionibacterium freudenreichii subsp. shermaniiMethylmalonyl-CoA mutase large subunit 3.40.50.280 164 8 57 2.53 4.37
2pfsA01 74.13 Universal stress protein (Usp)Nitrosomonas europaeaUniversal stress protein A 3.40.50.620 114 10 64 3.15 4.85
1jflA02 74.13 Aspartate racemase [EC:5.1.1.13]228aa long hypothetical aspartate racemasePyrococcus horikoshiiAlanine, aspartate and glutamate metabolism 3.40.50.1860 109 9 63 3.06 4.83
1mioB04 74.12 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 9 63 2.85 4.52
1xtqA00 73.99 Insulin signaling pathwayMTOR signaling pathwayGTP-binding protein RhebGTPase activityGTP binding 3.40.50.300 169 9 60 2.88 4.77
1mioB02 73.97 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 104 7 69 3.39 4.90
1pq4A02 73.86 Periplasmic binding protein component of an ABC type zinc uptake transporterZinc transport system substrate-binding proteinABC transportersSynechocystis sp. PCC 6803 3.40.50.1980 103 9 83 3.99 4.78
1r8jB01 73.65 Circadian clock protein kaiAIdentical protein bindingCircadian clock protein KaiAEntrainment of circadian clockSynechococcus elongatus PCC 7942 3.40.50.2300 149 10 61 2.98 4.83
1g7sA03 73.08 Methanothermobacter thermautotrophicus str. Delta HTranslation initiation factor IF-2 unclassified subunitProbable translation initiation factor IF-2 3.40.50.10050 81 9 66 3.23 4.82
1r2qA00 72.96 Ras-related protein Rab-5AGTP bindingEndocytosisGDP bindingGTPase activity 3.40.50.300 170 14 59 2.88 4.85
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Displaying entries 1 to 72 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1iibA00
KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSL
LYGKVDGLGVLKAAVAAIKKAAA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1iibA00
MEKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVID
SLLYGKVDGLGVLKAAVAAIKKAAAN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:13

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:13

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"