CATH Domain: 1idpA00 XML data for domain: 1idpA00

Molscript image for 1idpA00
1idpA00
PDB coordinates for domain 1idpA00

PDB 1idp, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.450 Nuclear Transport Factor 2; Chain: A,
3.10.450.50 Gene3D
3.10.450.50.7
3.10.450.50.7.1
3.10.450.50.7.1.1
3.10.450.50.7.1.1.1
3.10.450.50.7.1.1.1.1

Segment boundaries for domain 1idpA00

Chopping figure for domain 1idpA00
DomainStart PDB ResidueStop PDB Residue
1idpA00 9 155

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 3.10.450.50.7.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3cnxA00 84.36 Streptomyces avermitilisPutative uncharacterized protein 3.10.450.50 135 7 84 2.51 2.98
2ux0B00 83.81 Calcium/calmodulin-dependent protein kinase type II subunit gammaHomo sapiensCalcium- and calmodulin-dependent protein kinase complex 3.10.450.50 136 12 88 3.27 3.70
1gy6A00 83.41 Nuclear transport factor 2Nuclear poreHomo sapiensProtein bindingCytosol 3.10.450.50 125 9 82 2.92 3.52
3b8lA01 82.94 Novosphingobium aromaticivorans DSM 12444Putative uncharacterized protein 3.10.450.50 135 10 86 2.34 2.71
1tuhA00 82.32 Uncultured bacteriumPutative uncharacterized protein 3.10.450.50 131 6 82 2.87 3.49
3b7cA00 82.12 Shewanella oneidensisPutative uncharacterized protein 3.10.450.50 115 9 77 2.15 2.77
2rgqB00 82.08 3.10.450.50 124 16 82 3.22 3.91
1ohpA00 81.63 Comamonas testosteroniSteroid Delta-isomerase 3.10.450.50 125 7 80 2.54 3.14
1jkgA00 80.67 CytoplasmNuclear poreHomo sapiensNTF2-related export protein 1 3.10.450.50 139 9 82 2.87 3.49
2r4iA00 80.54 Cytophaga hutchinsonii ATCC 33406Putative uncharacterized protein 3.10.450.50 113 11 76 3.02 3.93
2owpA00 80.37 Burkholderia xenovorans LB400Putative uncharacterized protein 3.10.450.50 124 5 80 3.10 3.83
3blzA00 80.32 Shewanella baltica OS155Putative uncharacterized protein 3.10.450.50 123 6 82 3.37 4.09
1s5aA00 80.03 Bacillus subtilisUncharacterized protein yesE 3.10.450.50 135 2 81 2.78 3.41
1of5B00 79.93 Nuclear poreNuclear RNA export factor complexMRNA transport regulator MTR2Ribosomal large subunit export from nucleusSaccharomyces cerevisiae 3.10.450.50 128 10 81 3.18 3.90
1tp6A00 79.65 Pseudomonas aeruginosaPutative uncharacterized protein 3.10.450.50 126 7 78 2.92 3.70
3cu3A00 79.26 Domain of unknown function with a cystatin-like foldNostoc punctiforme PCC 73102 3.10.450.50 160 11 81 3.80 4.68
3bb9B00 79.21 Putative orphan proteinShewanella frigidimarina NCIMB 400 3.10.450.50 120 10 80 3.76 4.64
2bmoB00 78.18 Oxygenase-beta NBDOComamonas sp. JS765Protein binding 3.10.450.50 194 11 66 3.31 4.98
1jkgB00 78.03 Nuclear RNA export factor 1Homo sapiensProtein binding 3.10.450.50 180 9 72 3.12 4.29
3dm8A00 75.94 Rhodopseudomonas palustrisPutative uncharacterized protein 3.10.450.50 131 6 80 3.73 4.65
Displaying entries 1 to 20 (page 1 of 1)


Domain ATOM Sequence

>pdb|1idpA00
DEITFSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIG
GTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIRWGE    

Domain COMBS Sequence

>pdb|1idpA00
MGSQVQKSDEITFSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPT
LRTQHFIGGTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIRWGE    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:53

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:53

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:17

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"